Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00392 ATGAACCCCTACGACAGCAGATATTCTGACGCCTCTTCTTTTCGCGGCCGTCGTAGTGATTTCGTTGGACCTATTCCGCCGCCGTCTTTCGTCGGCCGCGGCGGCGCGGTTTCCTACGGCGTCCCTGGACCCAACGGGTTCCGATCCGCACCCGTTGCTCCGGTCCCACCCTTTGTGCCTCCTTCCGGAGGCTTTAATGTAGGTCGAGGCGGTGGCAGAGCGGGCTATGGTCATGTGAGTGATAGAATGGGTCGTAGCGGTGGTGGAAGAGGTCGTGGTGGTGGCGGCGGCGGGGGCGGTAGAGCCGGAGCTCACGGTTTTAGGGGCTCCGGGAGAGGAGGCAGACACGGTGGTGGTTCTTCTAGGGATGATTTGAACAACATTGCACTTCCAAAGCAGGATTTTAAGAATTTGGTCCCTTTTGAGAAGAACTTCTATGTTGAGTGCCCTGCAGTGAGGGCCATGTCTGAGCAAGAAGTTTTGCATTACCGTGCCAGTAGAGAGATCACCGTGCAAGGGAACGATGTGCCGAAGCCTGTAAGGATGTTTCATGAGGCGAATTTTCCTGATTACTGCCTTGAGGTTATTGCCAATCTGGGTTTTGCGGAGCCCACCCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTTAAGGGTAGAGACTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGTCGTATCTGCTTCCTGCTTTAGTGCATGTCAATGCACAACCTCGATTGGCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACAAGAGAGTTGGCTGTTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCCCGGGCAAATAAAAGAAGTACGTGCATCTATGGCGGCGCACCAAAGGGCCCCCAAATTCGGGAGCTTAAAAGAGGCGTTGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTGAAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGCTAGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGCCCAGATTCGACCAGATAGGCAAACACTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATACAAGGTAATTATTGGCTCACCATACCTGAAGGCAAATCAATCCATAAATCAAGTTGTTGAAGTTTTAACAGACATGGAGAAATACAATAGATTAATCAGGCTGCTGAAAGAAGTGATGGACGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACCAGACAAATGAGAGTGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACACCTTTTTTACACATGCCAATGCCAAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCTGGTCAGGTTGTGAGTCCTGCTTTGTCTGCATTGGTTCGGTCGGCTGGTTCTGGTCAATTTGGATCAGGGGGAAGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGAGGTTTAACGTCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGAGGCCCTGGCAGTGTCTGTAG 1818 0.4895 MNPYDSRYSDASSFRGRRSDFVGPIPPPSFVGRGGAVSYGVPGPNGFRSAPVAPVPPFVPPSGGFNVGRGGGRAGYGHVSDRMGRSGGGRGRGGGGGGGGRAGAHGFRGSGRGGRHGGGSSRDDLNNIALPKQDFKNLVPFEKNFYVECPAVRAMSEQEVLHYRASREITVQGNDVPKPVRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAVQIQEEALKFGSRANKRSTCIYGGAPKGPQIRELKRGVEIVIATPGRLIDMLEAQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLLWSATWPREVETLARQFLRNPYKVIIGSPYLKANQSINQVVEVLTDMEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRVDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQVVSPALSALVRSAGSGQFGSGGSFRSRGRGGYGNRGLTSGSNAIPLGSKRPWQCL 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00392 605 CDD SF2_C_DEAD 400 530 - -
Gma05g00392 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 541 IPR027417 -
Gma05g00392 605 Pfam DEAD/DEAH box helicase 205 376 IPR011545 GO:0003676|GO:0005524
Gma05g00392 605 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 387 IPR014001 -
Gma05g00392 605 Pfam Helicase conserved C-terminal domain 411 521 IPR001650 -
Gma05g00392 605 SMART helicmild6 440 521 IPR001650 -
Gma05g00392 605 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 64 590 - -
Gma05g00392 605 MobiDBLite consensus disorder prediction 565 586 - -
Gma05g00392 605 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 560 IPR001650 -
Gma05g00392 605 CDD DEADc_DDX5_DDX17 193 387 - -
Gma05g00392 605 MobiDBLite consensus disorder prediction 1 26 - -
Gma05g00392 605 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 181 209 IPR014014 GO:0003724
Gma05g00392 605 PANTHER LD32873P 64 590 - -
Gma05g00392 605 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 333 341 IPR000629 -
Gma05g00392 605 MobiDBLite consensus disorder prediction 69 127 - -
Gma05g00392 605 Gene3D - 392 563 IPR027417 -
Gma05g00392 605 SMART ultradead3 200 403 IPR014001 -
Gma05g00392 605 Gene3D - 154 391 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00392 Gma-Chr5 3702934 3708190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00392 168 541 Eukaryotic Initiation Factors Gene Family AT3G19760 34.492 2.07e-69 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00392 K12823 - gmx:100777610 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00392 05 3702934 3708190 Gma05g00392 05 3702934 3708190 ECH
Gma17g00803 17 6719659 6725108 Gma05g00392 05 3702934 3708190 GST