Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00391 ATGACGACGAGGTTCAAGAAGAACAGGAAGAAGAGAGGCCACGTCAGCGCCGGTCACGGTCGTATCGGGAAGCACCGCAAGCATCCCGGTGGTCGGGGTAACGCCGGTGGCATGCACCACCACCGCATCCTCTTCGACAAGTACCATCCCGGTTTCTTCGGAAAGGAGGCCAAGGACAAGGCCACCGCCGACAAGGCGCCATTGCTCGATGTCACCCAGTTCGGTTACTTTAAGGTTTTGGGTAAAGGGGTTTTGCCTCAGAACCAGCCTCTGGTCGTGAAGGCCAAGCTTGTTTCCAAGATCGCCGAGAAGAAGATCAAGGAGGCCGGTGGAGCCGTCGTTCTCACCGCCTGA 354 0.5791 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKEAKDKATADKAPLLDVTQFGYFKVLGKGVLPQNQPLVVKAKLVSKIAEKKIKEAGGAVVLTA 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00391 117 ProSitePatterns Ribosomal protein L15 signature. 78 110 IPR001196 GO:0003735|GO:0005840|GO:0006412
Gma05g00391 117 MobiDBLite consensus disorder prediction 1 35 - -
Gma05g00391 117 Gene3D - 37 117 - -
Gma05g00391 117 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 55 - -
Gma05g00391 117 PANTHER 60S RIBOSOMAL PROTEIN L27A 55 117 - -
Gma05g00391 117 SUPERFAMILY Ribosomal proteins L15p and L18e 6 116 IPR036227 -
Gma05g00391 117 MobiDBLite consensus disorder prediction 1 38 - -
Gma05g00391 117 Hamap 50S ribosomal protein L15 [rplO]. 1 116 IPR030878 GO:0003735|GO:0006412|GO:0015934
Gma05g00391 117 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 55 - -
Gma05g00391 117 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 55 117 - -
Gma05g00391 117 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 68 114 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00391 Gma-Chr5 3697105 3697545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00391 1 117 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 68.493 2.07e-63 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00391 K02900 - gmx:100527293 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00391 05 3697105 3697545 Gma17g00804 17 6726517 6727384 ECH
Gma05g00391 05 3697105 3697545 Gma05g00391 05 3697105 3697545 ECH
Gma17g00804 17 6726517 6727384 Gma05g00391 05 3697105 3697545 GST
Gma05g00391 05 3697105 3697545 Gma04g01818 04 48288285 48289085 PCT
Gma05g00391 05 3697105 3697545 Gma06g01591 06 15462449 15463352 PCT
Gma04g01818 04 48288285 48289085 Gma05g00391 05 3697105 3697545 PCT
Gma06g01591 06 15462449 15463352 Gma05g00391 05 3697105 3697545 PCT