Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00387 ATGGCATCATCCAGCTCTTACAACTCTCCATGTGCTGCCTGCAAGTTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCTCAAAAGTTCGCAAACGTCCACAAAATCTTTGGAGCCAGCAACGTGACGAAGCTCCTCAACGAGCTTCTCCCTCACCAGAGGGAGGATGCAGTGAACTCCCTCGCCTATGAGGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGTGTAGGAGCCATCTCATTCCTGCAGAGACAAGTCCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTATTCTTACACTGACATCACTCCAACCTCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCACCAAGTACCCCAAAGGCAGTTTAGTGCAAGATTTGGTAACGAAGCAAGTGGGTTTTATCGCCACCAATCTGCTGCTACTGCTTTTTCCTTTCCTTATGCTCTTCCTTGGACTGATACCTCCTCGGAGGATATCAGTGAGGGAGCAGGAGCAGGAGGAGGTAATTTGTGA 567 0.5009 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDITPTSLSVPPGLASFHQVPQRQFSARFGNEASGFYRHQSAATAFSFPYALPWTDTSSEDISEGAGAGGGNL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00387 188 Coils Coil 89 109 - -
Gma05g00387 188 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Gma05g00387 188 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 183 - -
Gma05g00387 188 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Gma05g00387 188 PANTHER ELONGATED PETIOLULE 1 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00387 Gma-Chr5 3636254 3636820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00387 2 116 AS2 family AT5G63090 91.304 1.20e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma05g00387 LOB 2.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00387 - - gmx:100803667 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00387 05 3636254 3636820 Gma17g00812 17 6806434 6807003 ECH
Gma05g00387 05 3636254 3636820 Gma05g00387 05 3636254 3636820 ECH
Gma17g00812 17 6806434 6807003 Gma05g00387 05 3636254 3636820 GST
Gma05g00387 05 3636254 3636820 Gma04g01810 04 48172079 48174576 PCT
Gma04g01810 04 48172079 48174576 Gma05g00387 05 3636254 3636820 PCT