Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00351 ATGGCCATCAGAGGCGTCGATTTCAAGTGGTACGATGGGTTTTTCTTGTCCATGCTCGCCACCAGTGTAGTTATAGTGGCAATTAATTGGAAGCGGTATCATTCTTGTACGTATCCGTTGCATATATGGATTGTGGTCGACTACACTACTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAACGGGCTTGCTGCAGGAATGGGATTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCTTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTTTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCCAAGAACTGTTTGCCTGAAGTGGGTACAAAATGGGGCTTTCTCATCTGGTTACTTTTTAGCTACTGTGGACTCCTTTGCATTGCTTGCATGTCGCTGGGGAAGTGGTTGACTCGAAGACAAGCACATTTATTGCGTGCCCAACAGGGTATCCCTGTATCTGAATACGGGGTTCTGGTTGACATGATCCGAGTTCCCGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGGGCATGGGCCAAGATGCTGCTGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCTATGTAGGAAATGAGGTCCGTGGCCTGCCTTGTGCTCACAATTTTCATGTCGAATGCATTGATGAGTGGCTTAGGTTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTTTTCCCAAACCTTGATCTTAGTGCACTGTCCAATCTCCGTGCTGAGCCTGAAGAATCTTCTGCCAGTGTTGTGACAACAACCAGATATGTGAGAGGCCAACCATCTAGTCAAAGTTACCGGCTAAGATTGCAGGGTCTTCTGCGTCCAGTCGGTGCTGAAATTGCAGGACCAGTTGGTGACATAGATAATGTGTTGGAAAATGCCGAGAATGGCAGCGTATCAATTGTGACTCAAAATGCATCATCTGGAGACCATGCCTCTTCTGTCGAATGTATGCCTGTTACTGTCAGTCATTCCTCTGCACAAAGTTAG 1149 0.4639 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVFSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEVGTKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRAEPEESSASVVTTTRYVRGQPSSQSYRLRLQGLLRPVGAEIAGPVGDIDNVLENAENGSVSIVTQNASSGDHASSVECMPVTVSHSSAQS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00351 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Gma05g00351 382 Pfam Ring finger domain 234 276 IPR001841 -
Gma05g00351 382 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Gma05g00351 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 IPR044793 GO:0004842|GO:0010182
Gma05g00351 382 CDD RING-H2_RNF111_like 234 278 - -
Gma05g00351 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 - -
Gma05g00351 382 SMART ring_2 235 275 IPR001841 -
Gma05g00351 382 SUPERFAMILY RING/U-box 217 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00351 Gma-Chr5 3280403 3285778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00351 58 360 C3H Transcription Factor Family AT3G47990 73.529 3.76e-160 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00351 K16284 - gmx:100812016 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00351 05 3280403 3285778 Gma05g00351 05 3280403 3285778 ECH
Gma17g00847 17 7179772 7185469 Gma05g00351 05 3280403 3285778 GST
Gma05g00351 05 3280403 3285778 Gma04g01767 04 47207866 47213101 PCT
Gma05g00351 05 3280403 3285778 Gma06g01635 06 16156225 16161946 PCT
Gma04g01767 04 47207866 47213101 Gma05g00351 05 3280403 3285778 PCT
Gma06g01635 06 16156225 16161946 Gma05g00351 05 3280403 3285778 PCT