Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00349 ATGAAAAAACCAAACACTAGTACTAGTGGTTCACCAAAACTTGATCGCAAAACTATCGAAAGGAACCGCAGGATTCACATGAAATCTCTCTGCTTCAAGCTTGTTTCCACTATTCCTTCCAATGACCTCAAACCCACCAAGGACATGCTTTCCCAGCAGGATCAGCTTGATCTAGCAACCACGTACATAAAGCGTCTGAAGGAAAGAATAGAGAAACTGAAGGGGGAGAAGGAGAAAATCATGAACATGATGATGAGCTCAAACCAAAACAACAATAGCATTTTCAATATTGGCTCACAGTTGCCTCTACTTGAGATAAAGGACTTGGGTTCGGGCATTGAAGTGATGTTGATAAGTGGGTTAAATAAGAACTTCATGCTCTATGAAGTAATTAGTGTCCTCGAGGAAGAGGGTGCTGAAGTTGTCACTGCCAACTTCTCTACAGTTGCTGATAAGATTTTTTACACGGTTCATGCTCAGGTTAAAATATCAAGAGTTGGTGTTGAGCCAACGAGGGTATATCAAAGGCTTCAGGAGTTGATTGCACCACTAGAAATCTGGGAGTACATACCATGA 576 0.4149 MKKPNTSTSGSPKLDRKTIERNRRIHMKSLCFKLVSTIPSNDLKPTKDMLSQQDQLDLATTYIKRLKERIEKLKGEKEKIMNMMMSSNQNNNSIFNIGSQLPLLEIKDLGSGIEVMLISGLNKNFMLYEVISVLEEEGAEVVTANFSTVADKIFYTVHAQVKISRVGVEPTRVYQRLQELIAPLEIWEYIP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00349 191 PANTHER TRANSCRIPTION FACTOR BHLH162 6 181 - -
Gma05g00349 191 MobiDBLite consensus disorder prediction 1 20 - -
Gma05g00349 191 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 6 181 IPR015660 GO:0003700|GO:0006357
Gma05g00349 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
Gma05g00349 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 78 IPR036638 GO:0046983
Gma05g00349 191 Coils Coil 56 90 - -
Gma05g00349 191 Gene3D - 3 95 IPR036638 GO:0046983
Gma05g00349 191 Pfam Helix-loop-helix DNA-binding domain 16 66 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00349 Gma-Chr5 3255210 3256084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00349 1 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.684 2.67e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma05g00349 HLH 5.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00349 - - gmx:100811485 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00349 05 3255210 3256084 Gma17g00849 17 7204027 7205292 ECH
Gma05g00349 05 3255210 3256084 Gma05g00349 05 3255210 3256084 ECH
Gma17g00849 17 7204027 7205292 Gma05g00349 05 3255210 3256084 GST
Gma05g00349 05 3255210 3256084 Gma06g01637 06 16185385 16187126 PCT
Gma06g01637 06 16185385 16187126 Gma05g00349 05 3255210 3256084 PCT