Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00340 ATGCGCAGCATCAATGGAAAGTTGAAGTACTCATCATATTATCCTCAATCTCCATTCTCAGCATTCGAAGCTCCCAACGATGGTAACATTAGCAATAACAAAGAAGCAACAACGCCATCATCTCTCAGCAGAATCAGTCCACTCATTTTACTGGTCATAATAGTTCTAGCAGTTATCTTCTTCGTCTACGGACTCGTCCATTTGATTCTGTGGTTTTTCATGAAGAGGCCATTATCACCTTCATCTCTCTATAGCTACTCCAACAGGTTCCACGAAAATTCCACGCGCTCCCGTGTTCTCCAAAGGCAGCTTCAGCAACTCTTCCGCTTGCATGATTCGGGTCTCGACCAAGCCCTCATAGACGCTCTACCCGTTTTCTATTACCAAGAATTGTTGGGGTCGAAGGAACCGTTCGACTGTGCCGTGTGTTTGTGCGAGTTCTCCAAGGAAGACAAGCTGAGGTTGCTTCCTATGTGCACGCACGCCTTCCACATGAACTGTCTTGACATGTGGCTCCTCTCGAATTCCACGTGTCCTCTTTGCAGGGCATCTCTGTCCGAGTATATGGAGAATCAGAATCAGAATCAGAATTCAATGCTTAATGTTGGAAATTCCAACTCTTTGGTTTTGCCCAGAGGTGAAGAAGAGAATAATGGGTGTTCAGATAGTCAAAGATCAGTGGGGAAAAGGGTGTTTTCTGTTAGACTTGGAAAATTTAGAAACAGTGGAGTGGAGGGTGGAGAGGTGGGAGGGGATGGTGGTTGTAGTTTGAATGAGAGGAGATGCTACTCTATGGGTTCGTATCGGTATGTGGTTCGTGATTTGAATTTGCAAGTAGTGTTATCTCATGGTGATGATGTTTTGGAAAATGGGAATGTGGAGGGGAAGAGGATAGGGGACTCAACCAAAGGTGAGAGCTTCTCTGTTTCCAAGATATGGCTTTGGTCCAAGAACACCACATTTCATGACTCTAATGCACCTTTCCCTTGA 990 0.4515 MRSINGKLKYSSYYPQSPFSAFEAPNDGNISNNKEATTPSSLSRISPLILLVIIVLAVIFFVYGLVHLILWFFMKRPLSPSSLYSYSNRFHENSTRSRVLQRQLQQLFRLHDSGLDQALIDALPVFYYQELLGSKEPFDCAVCLCEFSKEDKLRLLPMCTHAFHMNCLDMWLLSNSTCPLCRASLSEYMENQNQNQNSMLNVGNSNSLVLPRGEEENNGCSDSQRSVGKRVFSVRLGKFRNSGVEGGEVGGDGGCSLNERRCYSMGSYRYVVRDLNLQVVLSHGDDVLENGNVEGKRIGDSTKGESFSVSKIWLWSKNTTFHDSNAPFP 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00340 329 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 329 - -
Gma05g00340 329 SUPERFAMILY RING/U-box 119 197 - -
Gma05g00340 329 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Gma05g00340 329 SMART ring_2 140 181 IPR001841 -
Gma05g00340 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 329 - -
Gma05g00340 329 CDD RING-H2_PA-TM-RING 139 182 - -
Gma05g00340 329 Pfam Ring finger domain 139 182 IPR001841 -
Gma05g00340 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 192 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00340 Gma-Chr5 3163454 3164443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00340 43 317 C3H Transcription Factor Family AT2G18650 40.979 2.34e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00340 - - gmx:100807741 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00340 05 3163454 3164443 Gma17g00860 17 7285976 7287309 ECH
Gma05g00340 05 3163454 3164443 Gma05g00340 05 3163454 3164443 ECH
Gma17g00860 17 7285976 7287309 Gma05g00340 05 3163454 3164443 GST