Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00329 ATGTCGCTCAAGCGCCCCCCCGATGATGGGAAAACTCCAGACGACAAGCGTAGAAAGCCTCCTCCTTTCTCCAGTGTGGTGCGTGACGTGATGAAGTTACAAGcACTCGGGCATTTGCTGGAGCCAATTCTAGAGCCCTTGGTTCGTAAAGTGGTTAAGGAAGAAGTTGAAGCCGCCCTAAAGAGGCATTTAACCAGCATGAAACAGACCTGTGGAAAGGAGTTTCATACTACTGAATTAAGAAATTTGCAGCTGCAGTTTGAAAACAGCATTTGTCTTCCTGTCTTTACAGGAGCTCGAATTGAAGGAGAGGATGGCTCCAACTTAAGAATAAGTTTAGTTGATGCCCTAACAGGGAAGGTTGTTAGTACAGGACCTGAATCGTCAGCTAAGGTGGAAATTGTAGTCCTTGAGGGTGATTTTGAAGAGGAAAGTGAAACTTGGATGCCTGAAGAGTTCAAGAGCAATATTGTGAGAGAGAGGGAAGGAAAAAAGCCTCTTCTTACAGGAGATGTAATTTTATATCTTAAAGATGGGATTGGTATGGTGGGTGAAATTTCATATACAGATAATTCAAGCTGGACAAGGAGCCGTAGGTTCAGACTTGGAGCAAGAGTTGTGGACAACTTTGATGGTGTTGGAATAAGAGAAGCAAAGACAGAATCATTCATTGTCAGGGATCACAGAGGAGAATTGTACAAGAAGCACCATCCTCCTAGTCTGTCTGATGAAGTTTGGAGATTGGAAAAAATAGGCAAGGATGGAGCTTTCCACAAGCGCTTGAGTCGGGAAAAGATCCTTACTGTTAGAGAGTTTCTCACACTTCTCAATCTGGATCCAGCAAAGCTGCGCAGTATACTGGGCACTGGTATGTCTGCAAAGATGTGGGAAGTAACTGTGGAGCATGCTCGAACTTGTGTACTTGATACAACGAGGCACGTGTACTTCCCTTCTAATTCTCAAGAACCTGGTGTGGTCTTCAATGCTGTGGGACAAGTGACAGGACTGCTTTCTGAATGCGAGTATGTCACAGTAGAAAAGCTGACTGAAACTGAAAAGGCTGATGCTCAAAACTCAGTTACTGCTGCATTAAGACAAGGGGAGAAATACACAACTTTTGAAGATGAAGACTCTCTCATGGATGGGTCTTCACACTTAACTAATGTACTCTACTCCCCAAGCTCTCCCAAGACTGAGGGATCAAGTGCCATTTTGGCTCCCCAAAAGACTGGAGGATTCAATTATCCGCCTGCAAGTGCCTCTTCCCCAGATATCATGTCATCCATTTATTCTGTTGGTGGAACTAGTAGCTTGGATGACTATTGCTTGCCTAATTTTGACAGCATGGGCTTTAGATATGATCAGACCCTCAGCTTTCCAGTCCAAGTTTCCAACTCTTTGATCTGTGACACTGATTCAATGGCTCATGCTTTTAGTGATGAAGATCATCTGCAATTTTTTGACACTGATCTTCAATCTCACGTTCAAGCAGATTTACAGGGTGCTATTGATAGCTTCAGGCTGGCACGTCCTACGGCCAATGGTGGTGCACAGAGGAGATGGAGAAAGGTATGCAATGTCCTAAAATGGTTCATGGTTAGGAAACGAGGAAATCAAATACAGAATTTTGGAGAAAGAAAAAAATACAAGGAAGAAAGAAAGTCTTCAACCTCTATTCAATTCTCCAAGTGGGATTTTGAGATGGCATCATTTGCAGGCACTACCCAGAAGTGCACAGCATGTGAAAAGAAAGTGTATTGGGTGGAACAGCTCACTGCTGACAACAAGGTGTACCACAAATCTTGCTTCAGATGTCACCACTGCAAGGGCACCCTCAAGCTGAGTAATTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCTCATTTCCATCAACTGTTTAAGATGACTGGCAGCTTGGACAAAAGTTTTGAAGGTGTTCCAAGAAGTGTTAGAGTGGAAAGATCTGCTGATCAGGTCCAAACCAACAAGGTTTCAAGATTATTCTCTGGAACACAAGAAAAGTGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTGGCTGTTGATGGTAAATCTTACCACAAGTCTTGTTTTAGGTGCACCCATGGAGGTTGTGTAATAAGCCCATCAAATTATATTGCCCATGAACATCGTCTTTATTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGCAACTTCAGTCAATTAGACAAGCATGAAAATGTCCAAGTCATCACTGAGATCACAATAACACAACACACTGAGAACACAACACAACATCCGGATCCGAGTAATGGCAATACTGATACAACTCCAGCTGAGGAATCTAGTTAG 2349 0.4321 MSLKRPPDDGKTPDDKRRKPPPFSSVVRDVMKLQALGHLLEPILEPLVRKVVKEEVEAALKRHLTSMKQTCGKEFHTTELRNLQLQFENSICLPVFTGARIEGEDGSNLRISLVDALTGKVVSTGPESSAKVEIVVLEGDFEEESETWMPEEFKSNIVREREGKKPLLTGDVILYLKDGIGMVGEISYTDNSSWTRSRRFRLGARVVDNFDGVGIREAKTESFIVRDHRGELYKKHHPPSLSDEVWRLEKIGKDGAFHKRLSREKILTVREFLTLLNLDPAKLRSILGTGMSAKMWEVTVEHARTCVLDTTRHVYFPSNSQEPGVVFNAVGQVTGLLSECEYVTVEKLTETEKADAQNSVTAALRQGEKYTTFEDEDSLMDGSSHLTNVLYSPSSPKTEGSSAILAPQKTGGFNYPPASASSPDIMSSIYSVGGTSSLDDYCLPNFDSMGFRYDQTLSFPVQVSNSLICDTDSMAHAFSDEDHLQFFDTDLQSHVQADLQGAIDSFRLARPTANGGAQRRWRKVCNVLKWFMVRKRGNQIQNFGERKKYKEERKSSTSIQFSKWDFEMASFAGTTQKCTACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFHQLFKMTGSLDKSFEGVPRSVRVERSADQVQTNKVSRLFSGTQEKCVGCKKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYIAHEHRLYCRHHHTQLFKQKGNFSQLDKHENVQVITEITITQHTENTTQHPDPSNGNTDTTPAEESS 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00329 782 PANTHER CALMODULIN-BINDING PROTEIN 60 A 9 537 - -
Gma05g00329 782 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 702 740 - -
Gma05g00329 782 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 668 701 - -
Gma05g00329 782 Pfam Calmodulin binding protein-like N-terminal domain 83 228 IPR046831 -
Gma05g00329 782 ProSiteProfiles LIM domain profile. 576 636 IPR001781 -
Gma05g00329 782 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 604 644 - -
Gma05g00329 782 Pfam Calmodulin binding protein C-terminal domain 313 371 IPR046829 -
Gma05g00329 782 Pfam LIM domain 676 731 IPR001781 -
Gma05g00329 782 Pfam LIM domain 578 633 IPR001781 -
Gma05g00329 782 MobiDBLite consensus disorder prediction 1 23 - -
Gma05g00329 782 ProSiteProfiles LIM domain profile. 674 734 IPR001781 -
Gma05g00329 782 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 570 603 - -
Gma05g00329 782 PANTHER OS02G0177800 PROTEIN 9 537 IPR012416 GO:0005516
Gma05g00329 782 MobiDBLite consensus disorder prediction 1 24 - -
Gma05g00329 782 CDD LIM2_SF3 676 736 - -
Gma05g00329 782 Pfam Calmodulin binding protein central domain 240 306 IPR046830 -
Gma05g00329 782 CDD LIM1_SF3 574 635 - -
Gma05g00329 782 MobiDBLite consensus disorder prediction 758 782 - -
Gma05g00329 782 ProSitePatterns LIM zinc-binding domain signature. 578 612 IPR001781 -
Gma05g00329 782 SMART lim_4 675 727 IPR001781 -
Gma05g00329 782 SMART lim_4 577 629 IPR001781 -
Gma05g00329 782 Gene3D Cysteine Rich Protein 670 740 - -
Gma05g00329 782 Gene3D Cysteine Rich Protein 572 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00329 Gma-Chr5 3046641 3060600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00329 1 354 Calmodulin-binding Proteins AT5G62570 60.942 2.25e-152 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gma05g00329 Calmodulin_bind 9.5e-118 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00329 - - gmx:100804548 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00329 05 3046641 3060600 Gma05g00329 05 3046641 3060600 ECH
Gma17g00869 17 7374928 7378825 Gma05g00329 05 3046641 3060600 GST
Gma05g00329 05 3046641 3060600 Gma04g01739 04 46791096 46800934 PCT
Gma05g00329 05 3046641 3060600 Gma06g01655 06 16463023 16466670 PCT
Gma04g01739 04 46791096 46800934 Gma05g00329 05 3046641 3060600 PCT
Gma06g01655 06 16463023 16466670 Gma05g00329 05 3046641 3060600 PCT