Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00320 ATGGCTTCTTCAGATCCTATCCCTTCCCGTCATTGCACTTACAACCGCAAGCAAAAATCCCTCGGCCTTCTCTGCACCAATTTTTTGAGTTTATACGATCGAGGGTCTGTTCATCTGATCGGCCTCGACGATGCTGCCATCCGATTAGGCGTTGAGAGGAGGCGGATCTATGACATTGTTAATGTCCTCGAGAGTATTGGGTTGCTATCAAGGAAGGCGAAAAATCAGTATATTTGGAGAGGTTTTGTCGCAATTCCTCACACTCTTCAGGAGCTCAAGGAAGAGGGGTTGAAGGATAATTCCAATTTCTTGCGTGGTTCTGGAAACGACAACGACAAAGTGTCCGACGACGAAGATGACGAGGAAACACTGTCTAATCCCGCTACTGGAAGTCAAAGCGACAAGTTGAACCCTAATTCTTCTACTCTTACTAAATCTCTGAAAAATGGCAAGGAAAAATCTCTTGCTCTGCTTACCCAGAATTTTGTTAAGCTCTTTGTCTGCTCTAATGTGGAGTTGATCTCCCTTGACGAGGCTGCAAAATTGTTACTTGGGGATGCCCATAATACTTCTGTAATGAGAACCAAAGTTAGACGCCTATATGACATCGCAAATGTGCTATCCTCCATGAATCTTATTGAGAAGACCCATACGACAGATACAAGAAAACCAGCATTCCGGTGGCTGGGTTCTGAAGGGAAGACATGGAATGAGACACTTCACAAATCAAACCTGAACGAGTCTAGGAAAAGGGCTTTTGGAAGTGATATCACAAACATCAGTTTTGAGAGGAATAACGTGGAATTGTTCACGAATGGCGACTCAAATCCGAATCCTAAGAAGCCAAGAATGGAATATGGCAGTGGGCTGGGTCAGGCAGATGAAAACAATTTAAAACAAGGCACAAAACAAGCTTCAAAGAACTATCAATTTGGTCCTTTCGCTCCGGCTTGTGTGCCCAAAGTTGGAGCCTCTGAGAATAATAATCTGAAGCAGGTGCATGGCTGGGACAGTCTTGCAACTGCAAATAGCCCTCAGTATCAAAATGAAGCCTTGAGAGAACTGTACTCGCATTACATGGAAGCATGGAAATCGTGGTACTCAGAAATTGCTGGGAAGAGGTCATTACAAATTTTGTAA 1140 0.4386 MASSDPIPSRHCTYNRKQKSLGLLCTNFLSLYDRGSVHLIGLDDAAIRLGVERRRIYDIVNVLESIGLLSRKAKNQYIWRGFVAIPHTLQELKEEGLKDNSNFLRGSGNDNDKVSDDEDDEETLSNPATGSQSDKLNPNSSTLTKSLKNGKEKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGSEGKTWNETLHKSNLNESRKRAFGSDITNISFERNNVELFTNGDSNPNPKKPRMEYGSGLGQADENNLKQGTKQASKNYQFGPFAPACVPKVGASENNNLKQVHGWDSLATANSPQYQNEALRELYSHYMEAWKSWYSEIAGKRSLQIL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00320 379 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 8 370 - -
Gma05g00320 379 Gene3D - 11 83 IPR036388 -
Gma05g00320 379 Gene3D - 146 232 IPR036388 -
Gma05g00320 379 PANTHER TRANSCRIPTION FACTOR E2F 8 370 IPR015633 GO:0000978|GO:0006357
Gma05g00320 379 SUPERFAMILY "Winged helix" DNA-binding domain 152 231 IPR036390 -
Gma05g00320 379 SMART E2F_TDP_2 150 230 IPR003316 GO:0005667|GO:0006355
Gma05g00320 379 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Gma05g00320 379 MobiDBLite consensus disorder prediction 100 146 - -
Gma05g00320 379 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Gma05g00320 379 Pfam E2F/DP family winged-helix DNA-binding domain 151 230 IPR003316 GO:0005667|GO:0006355
Gma05g00320 379 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Gma05g00320 379 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00320 Gma-Chr5 2955233 2958390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00320 11 376 E2F-DP Transcription Factor Family AT3G48160 53.316 2.64e-122 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma05g00320 E2F_TDP 6.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00320 K09391 - gmx:100806151 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00320 05 2955233 2958390 Gma05g00320 05 2955233 2958390 ECH
Gma17g00880 17 7461294 7465427 Gma05g00320 05 2955233 2958390 GST
Gma05g00320 05 2955233 2958390 Gma04g01726 04 46605407 46610896 PCT
Gma05g00320 05 2955233 2958390 Gma06g01668 06 16643943 16647065 PCT
Gma04g01726 04 46605407 46610896 Gma05g00320 05 2955233 2958390 PCT
Gma06g01668 06 16643943 16647065 Gma05g00320 05 2955233 2958390 PCT