Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00311 ATGTCTCGCGCCTCTTCCGCCGCCTCCGGCGAGATCATGCTGTTCGGGGTCAGAGTCGTCGTCGATTCGATGAGGAAGAGCGTCAGCATGAACAACCTCTCACAGTACGAACATCCTTTAGACGCCACCACCACCAACAACAACAAAGACGCCGTCGCCGCCGGCTACGCCTCCGCCGACGACGCCGCTCCTCAGAACTCCGGGCGCCACCGCGAGCGCGAGCGAAAGCGAGGAGTTCCGTGGACGGAGGAAGAACACAAGTTGTTTTTGGTTGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGAGGAATCTCCAAAAACTACGTCAAAACGCGAACTCCGACGCAGGTTGCCAGCCATGCTCAGAAGTACTTTCTCCGACGAAGCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTTGACATCACCACCGACACGGTCTCTGCAATTCCGATGGAGGAAGAACAGGTCCAGAATCAAGACACCCTGTGTCATTCACAACAACAACCCGTGTTCCCTGCTGAAACTAGCAAAATCAATGGGTTTCCAGCGATGCCAGTGTATCAGTTTGGGGTTGGTTCTTCTGGAGTGATTTCAGTCCAAGGTACTGGAAACCCAATGGAAGAACTCACTCTGGGACAAGGAAACGTGGAAAAACACAATGTGCCAAACAAGGCCTCTACAGTGTCTGGTATCATCACCCCCGGTTCTTCTAGTTCTGCCATTGACCCACCACCGACACTGTCCCTGGGGCTATCCTTCTCATCTGACCAAAGACAGACATCATCAAGACATTCAGCTTTACATGCCATGCAATGTTTCAGCAATGGAGATAGCATCATTAGTGTTGCTTGA 858 0.5245 MSRASSAASGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPLDATTTNNNKDAVAAGYASADDAAPQNSGRHRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVQNQDTLCHSQQQPVFPAETSKINGFPAMPVYQFGVGSSGVISVQGTGNPMEELTLGQGNVEKHNVPNKASTVSGIITPGSSSSAIDPPPTLSLGLSFSSDQRQTSSRHSALHAMQCFSNGDSIISVA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00311 285 CDD SANT 80 125 IPR001005 -
Gma05g00311 285 Pfam Myb-like DNA-binding domain 80 125 IPR001005 -
Gma05g00311 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 129 IPR017930 -
Gma05g00311 285 Gene3D - 79 131 - -
Gma05g00311 285 MobiDBLite consensus disorder prediction 65 79 - -
Gma05g00311 285 ProSiteProfiles SANT domain profile. 76 129 IPR017884 -
Gma05g00311 285 MobiDBLite consensus disorder prediction 57 79 - -
Gma05g00311 285 SMART sant 77 127 IPR001005 -
Gma05g00311 285 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 11 285 - -
Gma05g00311 285 ProSiteProfiles Myb-like domain profile. 73 125 IPR001005 -
Gma05g00311 285 MobiDBLite consensus disorder prediction 229 258 - -
Gma05g00311 285 SUPERFAMILY Homeodomain-like 75 130 IPR009057 -
Gma05g00311 285 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 76 127 IPR006447 GO:0003677
Gma05g00311 285 PANTHER KIN2 11 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00311 Gma-Chr5 2852623 2854864 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma05g00311 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00311 - - gmx:778059 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00889 17 7549453 7551625 Gma05g00311 05 2852623 2854864 GST
Gma05g00311 05 2852623 2854864 Gma04g01717 04 46379308 46381978 PCT
Gma05g00311 05 2852623 2854864 Gma06g01677 06 16777822 16780733 PCT
Gma04g01717 04 46379308 46381978 Gma05g00311 05 2852623 2854864 PCT
Gma06g01677 06 16777822 16780733 Gma05g00311 05 2852623 2854864 PCT