Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00307 ATGGAACCTCTTCTCTTCAACGACTCCACATTCTCTTCAGCTAACCCTTCTTTGTCTGAGATTTGGCCCTCTCATTTCCCCTCCGATCACACTCCCAGGAAGAGGCGCCTCTCCCCCTCGAGTGATTCTGCCAGCAATAAACATATCAAGTTATCAGCACCAGAATCCCAGGATCAAAACGGTGCGTTGAAGGTTGGTGAAGTAGACGCGACTTCCGTGGCCGGTAACAAGCTACCTCAACAAACCCCGAAACCTAGTTcttcggagcaggcacctaagcaagactatatacacgtgcgagccagaagaggccaagccaccgataaccacagtctggctgagagagctagaagggaaaaaatcagtgagaggatgaaaattcttcaggatttagtccccgggtgcaacaaggtaattggtaaagcatttgtgctggatgagataattaattatgtccagtcactgcaacgtcaggttgagttcctttcaatgaagcttgaggcagttagttcgagattgagcatgaagcctactcttgaatgttttccttcaaaagaagtaagtgtATTGACGTTTGCACTCAGGCCGGAATAA 594 0.2407 MEPLLFNDSTFSSANPSLSEIWPSHFPSDHTPRKRRLSPSSDSASNKHIKLSAPESQDQNGALKVGEVDATSVAGNKLPQQTPKPSSSEQAPKQDYIHVRARRGQATDNHSLAERARREKISERMKILQDLVPGCNKVIGKAFVLDEIINYVQSLQRQVEFLSMKLEAVSSRLSMKPTLECFPSKEVSVLTFALRPE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00307 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 173 IPR036638 GO:0046983
Gma05g00307 197 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 193 IPR024097 GO:0006355
Gma05g00307 197 SMART finulus 111 161 IPR011598 GO:0046983
Gma05g00307 197 CDD bHLH_AtBPE_like 95 174 - -
Gma05g00307 197 Gene3D - 102 179 IPR036638 GO:0046983
Gma05g00307 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 155 IPR011598 GO:0046983
Gma05g00307 197 MobiDBLite consensus disorder prediction 42 59 - -
Gma05g00307 197 Pfam Helix-loop-helix DNA-binding domain 109 156 IPR011598 GO:0046983
Gma05g00307 197 MobiDBLite consensus disorder prediction 1 24 - -
Gma05g00307 197 Coils Coil 152 172 - -
Gma05g00307 197 MobiDBLite consensus disorder prediction 27 41 - -
Gma05g00307 197 MobiDBLite consensus disorder prediction 1 93 - -
Gma05g00307 197 MobiDBLite consensus disorder prediction 74 93 - -
Gma05g00307 197 PANTHER TRANSCRIPTION FACTOR BPE 37 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00307 Gma-Chr5 2810342 2814053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00307 1 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 44.622 4.22e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma05g00307 HLH 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00307 - - gmx:100809878 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00307 05 2810342 2814053 Gma17g00894 17 7593910 7597190 ECH
Gma05g00307 05 2810342 2814053 Gma05g00307 05 2810342 2814053 ECH