Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00298 ATGGGGAACTGCAACGCCTGCGTTCGAGTCGATGACGTGGCAGACTCAAACCGCGGCAAAAAGAATAAGAAAACCAAACCGAACCCCTACGCGGAGGAAGAGATACGCTCCGGCGTTCCGATCCGTGTGCTGAAGGACGTGACGTCACGGAGCCTCATCGGCGACAAGTACGTGATAGGCCGGGAGCTAGGTCGTGGCGAGTTCGGGATAACGTACCTCTGCACGGACCGCGAAACGAAGCAGGAGCTCGCGTGCAAGTCGATCTCGAAGCGGAAGCTGAGAACCGCGATCGACGTGGAGGACGTGCGGCGAGAGGTGGCGATCATGTCGACGCTGCCGGAGCACGCTAACGTGGTGAAGCTGAAGGCGACTTACGAGGACGAAGAGAACGTTCATCTCGTTATGGAGCTCTGCGCCGGCGGGGAGCTCTTCGACCGGATCGTCGCGCGGGGGCACTACAGCGAGCGTGCCGCCGCGAACGTGGCGAGGACCATTGCTGAGGTTGTTAGGATGTGTCACGCCAATGGTGTTATGCATCGAGACCTTAAACCTGAGAATTTTCTCTTTGCGAATAAGAAGGAGAATTCTGTTCTCAAGGCTATTGACTTTGGACTCTCCGTGTTTTTCAAGCCAGGGGAGAGGTTTTCGGAGATTGTGGGGAGTCCTTACTACATGGCGCCGGAGGTATTGAAAAGGAATTATGGGCCAGAGGTGGATGTGTGGAGTGCTGGGGTGATTCTTTATATTTTGTTGTGTGGAGTTCCTCCGTTTTGGGCAGAGGACGAACGAGGGGTGGCTTTGGCAATATTGAGGGGAGTGATTGACTTCAAGAGAGAACCGTGGCCTCAGATTTCAGATAGTGCTAAGAGTCTTGTGCGCCAGATGTTGGAGCATGATCCTAAGAAGCGCTTGACGGCTGAACAGGTGCTTGAGCATTCCTGGTTACAAAATGCAAAGAAAGCTTCAAATGTTCCATTAGGAGATATTGTGAGAACAAGGCTTAGGCAATTCTCTTTGATGAATAGATTAAAAAAGAGAGCACTTCGGGTAATTGCAGAGCATTTGTCTGTTGAAGAGGTAGAAATAATCAAAGACATGTTTACATTGATGGACACAAACAAAGATGGCAAAGTAACATATGAGGAGCTGAAGGTTGGGTTACGGAAGGTTGGTTCACAATTGGCTGAGCCAGAGATAAAGATGCTGATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTTGACTATGGAGAGTTTGTAGCCGTGACAATTCACTTGCAAAGAATGGAGAATGATGAGCATTTCCGCAAAGCATTCATGTATTTTGACAAAGATGGGAGTGGGTATATCGAGTTAGGTGAGCTGGAGAAAGCATTAACAGATGAGTCGGGAGATACTGATACTGCTGTATTGAATGACATCATGCGTGAAGTTGACACTGACAGGGATGGTCGTATCAGTTATGAAGAGTTTGTGGCCATGATGAAAACTGGAACTGACTGGAGAAAAGCATCTAGGCAGTATTCAAGGGAGAGATTCAAGAGCTTGAGCATAAATTTGATGAAGGATGGCTCACTTCAGCTTCATGATGATATTAGTGGTCAAGCTGTAGTGGTTTGA 1620 0.4895 MGNCNACVRVDDVADSNRGKKNKKTKPNPYAEEEIRSGVPIRVLKDVTSRSLIGDKYVIGRELGRGEFGITYLCTDRETKQELACKSISKRKLRTAIDVEDVRREVAIMSTLPEHANVVKLKATYEDEENVHLVMELCAGGELFDRIVARGHYSERAAANVARTIAEVVRMCHANGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAEDERGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEHDPKKRLTAEQVLEHSWLQNAKKASNVPLGDIVRTRLRQFSLMNRLKKRALRVIAEHLSVEEVEIIKDMFTLMDTNKDGKVTYEELKVGLRKVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFMYFDKDGSGYIELGELEKALTDESGDTDTAVLNDIMREVDTDRDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDDISGQAVVV 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00298 539 ProSitePatterns EF-hand calcium-binding domain. 479 491 IPR018247 -
Gma05g00298 539 SUPERFAMILY Protein kinase-like (PK-like) 53 323 IPR011009 -
Gma05g00298 539 CDD EFh 434 496 IPR002048 GO:0005509
Gma05g00298 539 Pfam Protein kinase domain 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00298 539 ProSitePatterns EF-hand calcium-binding domain. 371 383 IPR018247 -
Gma05g00298 539 Gene3D Phosphorylase Kinase; domain 1 58 142 - -
Gma05g00298 539 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Gma05g00298 539 PANTHER SERINE/THREONINE-PROTEIN KINASE 17 515 - -
Gma05g00298 539 Pfam EF-hand domain pair 363 422 IPR002048 GO:0005509
Gma05g00298 539 Pfam EF-hand domain pair 433 496 IPR002048 GO:0005509
Gma05g00298 539 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Gma05g00298 539 ProSiteProfiles EF-hand calcium-binding domain profile. 466 501 IPR002048 GO:0005509
Gma05g00298 539 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Gma05g00298 539 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00298 539 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Gma05g00298 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Gma05g00298 539 ProSiteProfiles EF-hand calcium-binding domain profile. 394 429 IPR002048 GO:0005509
Gma05g00298 539 Gene3D - 324 499 - -
Gma05g00298 539 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Gma05g00298 539 SUPERFAMILY EF-hand 343 522 IPR011992 -
Gma05g00298 539 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00298 539 CDD STKc_CAMK 56 314 - -
Gma05g00298 539 Gene3D Transferase(Phosphotransferase) domain 1 143 323 - -
Gma05g00298 539 PANTHER BNAA09G44420D PROTEIN 17 515 - -
Gma05g00298 539 SMART efh_1 362 390 IPR002048 GO:0005509
Gma05g00298 539 SMART efh_1 434 462 IPR002048 GO:0005509
Gma05g00298 539 SMART efh_1 470 498 IPR002048 GO:0005509
Gma05g00298 539 SMART efh_1 398 426 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00298 Gma-Chr5 2716610 2720539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00298 1 539 EF-hand Containing Proteins AT1G74740 77.839 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma05g00298 Pkinase 7.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00298 K13412 - gmx:100779935 1070.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00298 05 2716610 2720539 Gma05g00298 05 2716610 2720539 ECH
Gma17g00902 17 7678043 7681901 Gma05g00298 05 2716610 2720539 GST