Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00292 ATGGCGGGTAGTGGAAGTGCCTTTTCCAACATCACTAGCTTTCTTCGCACCCAACAACCCTCTTCTCAACCTCTCGATTCTTCTCTCTTCCTCTCTGCACCTTCCTCTGCTCCTTTCCTCGGTTCGAGATCCATGATGAGTTTTGAAGGAGAAGGAGGGAAGGGGTGTAACGGCTCCTTCTTCCGCGCGTTTGACATGGACGACAATGGGGATGAGTGCATGGACGAGTACTTTCATCAACCCGAGAAGAAGCGACGTCTCTCTGCGAGCCAGGTTCAGTTTCTAGAGAAGAGCTTCGAGGAGGAGAACAAGCTTGAACCCGAGAGAAAGACCAAACTAGCCAAAGACCTTGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTCCAGAACCGTAGAGCTCGGTGGAAGAACAAACAGCTGGAGAAGGATTACGAGACTCTGCATGCAAGTTTTGAGAGTCTCAAGTCCAACTATGACTGTCTCCTCAAGGAGAAAGACAAGTTAAAAGCTGAGGTGGCGAGCCTCACTGAGAAGGTGCTTGCAAGAGGGAAACAAGAGGGGCACATGAAGCAGGCTGAAAGTGAAAGTGAAGAAACAAAAGGATTATTGCATTTGCAGGAACAGGAACCACCCCAGAGGCTTTTACTGCAATCAGTTTCGGAGGGAGAAGGATCCAAAGTCTCTTCTGTCGTTGGGGGTTGTAAACAGGAAGATATCAGTTCAGCAAGGAGTGACATTTTGGATTCAGATAGTCCACATTACACCGATGGAGTTCACTCTGCGCTGCTAGAGCATGGTGATTCTTCTTATGTGTTTGAGCCTGATCAATCAGATATGTCACAAGATGAAGAAGATAACCTCAGCAAGAGTCTCTACCCTTCGTACCTCTTTCCCAAACTTGAAGAAGATGTGGATTACTCCGACCCACCTGAAAGTTCTTGTAATTTTGGATTTCCTGAGGAAGATCATGTCCTTTGGACCTGGGCTTACTACTAA 996 0.4749 MAGSGSAFSNITSFLRTQQPSSQPLDSSLFLSAPSSAPFLGSRSMMSFEGEGGKGCNGSFFRAFDMDDNGDECMDEYFHQPEKKRRLSASQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKNKQLEKDYETLHASFESLKSNYDCLLKEKDKLKAEVASLTEKVLARGKQEGHMKQAESESEETKGLLHLQEQEPPQRLLLQSVSEGEGSKVSSVVGGCKQEDISSARSDILDSDSPHYTDGVHSALLEHGDSSYVFEPDQSDMSQDEEDNLSKSLYPSYLFPKLEEDVDYSDPPESSCNFGFPEEDHVLWTWAYY 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00292 331 PRINTS Lambda-repressor HTH signature 109 118 IPR000047 GO:0003677
Gma05g00292 331 PRINTS Lambda-repressor HTH signature 118 134 IPR000047 GO:0003677
Gma05g00292 331 Gene3D - 77 152 - -
Gma05g00292 331 CDD homeodomain 83 139 IPR001356 GO:0003677
Gma05g00292 331 Pfam Homeodomain 83 137 IPR001356 GO:0003677
Gma05g00292 331 Coils Coil 137 178 - -
Gma05g00292 331 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Gma05g00292 331 SUPERFAMILY Homeodomain-like 67 140 IPR009057 -
Gma05g00292 331 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 8 330 IPR045224 GO:0003700
Gma05g00292 331 SMART HOX_1 81 142 IPR001356 GO:0003677
Gma05g00292 331 Pfam Homeobox associated leucine zipper 138 179 IPR003106 GO:0006355|GO:0043565
Gma05g00292 331 Coils Coil 189 209 - -
Gma05g00292 331 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Gma05g00292 331 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 8 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00292 Gma-Chr5 2627247 2629959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00292 41 186 Homeobox Transcription Factor Family AT3G01470 56.849 3.19e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma05g00292 Homeodomain 6.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00292 - - gmx:100799054 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00292 05 2627247 2629959 Gma17g00910 17 7771695 7774321 ECH
Gma05g00292 05 2627247 2629959 Gma05g00292 05 2627247 2629959 ECH
Gma17g00910 17 7771695 7774321 Gma05g00292 05 2627247 2629959 GST