Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00252 ATGGGAAGAGTTAAATTGAAGATCAAGAAATTAGAAAGCATAAGCAATCGACACGTGACTTACTCAAAGCGAAAAAGTGGAATTATTAAGAAAGCAAAGGAATTGTCAATACTGTGTGATATAGATGTTGTCCTTCTTATGTTTTCTCCAACAGGAAAACCTACATTACTACAAGGAGAACGCAGCAATATTGAGGAGATCATTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGAGCCAAAAGCAGGAAAATGGAGAGCCTTGAAGCACTAAAGAAAACCTTTAGGAAGTTAGACCATGACGTAAAAATACAAGATTTCTTAGGTTCAAGCAGTCAAACAATGGAGGAATTATCTTACCAAGTCAAGGTTTTACAAGCTCAGATCACAGAAGTACAACAGAGACTGAGCTATTGGAATAATCTAGAGAAGATCAACAACTTGGAACATCTTAGACAAATGGAAGATTCACTACGGGAATCAATCAATCGAGTAGGCCTACAAAAAGAAAATTTAGGAAAGCACAAACTCATTTCACTTGAATGTGCTAACCAATTGCAGGAAGGGATGGCATTACCTTCGATGATCGCAAGTCTACAAGACTCCCAACCATTGTCTTGGCTTTTGAATGACGATAATCATCACTTGATGTTACCCAACGAGCCAAAATTTCAATCATTTAGTGATAATACCAATAGAGATGTTGAGTGTTCAACTGACATTTCACTCCCAAACTATTCTGGATATATTGGGAGCAACAAATTTGAAGTTGGCAGCTCTCCCCAAGTCACTACTTTGGGTCAAGGAGGTGGTGCCATGAATGAGTTAAATGGAACTACTTTCTTAAATGTACAATGTTGTGACCAGTTTGCATACCCTCCCCCACCAGATATCGAGGAAGTGAAACAATTCCCTACAATGGACAATAAATCAAACACTGTGGATTACCAAGTTCATAACAACTTTGATCTTCCAAGATCATTGTTTGAAAATGGACATCAGTTTTGGAATTCTGCTTCTGGGTCTTGTGGGATAGCCATGTTTAACGAGAACAACTACCATAAGTAA 1068 0.3801 MGRVKLKIKKLESISNRHVTYSKRKSGIIKKAKELSILCDIDVVLLMFSPTGKPTLLQGERSNIEEIIAKFAQLSPQERAKSRKMESLEALKKTFRKLDHDVKIQDFLGSSSQTMEELSYQVKVLQAQITEVQQRLSYWNNLEKINNLEHLRQMEDSLRESINRVGLQKENLGKHKLISLECANQLQEGMALPSMIASLQDSQPLSWLLNDDNHHLMLPNEPKFQSFSDNTNRDVECSTDISLPNYSGYIGSNKFEVGSSPQVTTLGQGGGAMNELNGTTFLNVQCCDQFAYPPPPDIEEVKQFPTMDNKSNTVDYQVHNNFDLPRSLFENGHQFWNSASGSCGIAMFNENNYHK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00252 355 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 354 - -
Gma05g00252 355 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 354 - -
Gma05g00252 355 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma05g00252 355 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma05g00252 355 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma05g00252 355 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Gma05g00252 355 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Gma05g00252 355 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma05g00252 355 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gma05g00252 355 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Gma05g00252 355 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Gma05g00252 355 Coils Coil 115 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00252 Gma-Chr5 2285677 2290478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00252 1 277 Type I MADS-box Gene Family AT2G03060 48.252 1.54e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma05g00252 SRF-TF 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00252 - - gmx:100787065 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00252 05 2285677 2290478 Gma05g00252 05 2285677 2290478 ECH
Gma17g00952 17 8115682 8120207 Gma05g00252 05 2285677 2290478 GST