Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00248 ATGGAAACTGGAAGAATCCAGGGACCTTGGGGATTTCGCTCTTTATCCAAAGTCGTTTTGTGCACCATTTCTGGGGCCCTGACCGTGTGTTTTGCCATTGCTGGGGCCCTCACAGGAGCTATAGCTGGTGCTCTAGCAGCTAAGGCTACTAAGAGTGGTCTTCTCCGGGGAGTTTCATTGGGTGCCATTGCCGGCTCTATACTCTCCGTGGAGGTGTTGGAAGCTTCCCGCGCCTATTGGTGTATGGAGCAAACCGGCTCACGGGGTGCATCATCTATGGCAGATTTCATAGAGGAACTTGTTCGTGGGAGGCTTGTTGAGGAATCCCTTACACCTGCTATTTTAACTGCTTACAATTTGCAGTTTGAGCAGGTTGGCATTGCTAATACAGGCTATGATGAGATTCATGATGTTCATGGCTTAGTGGCACCCAGAGGATTGTCAGGAGATTCATTGAAGAGGTTACCGCACCATATGATCTCAAAGGATATGAAGGCAGATAATACTTGCTGTGCAATATGTTTGCAGGATATTGAAGTAGGCGAAATTGCACGAAGCTTACCTCGCTGTCACCATACATTTCACTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCGTGTCCTGTTTGCAGACAGAATGTGCAACTTGTTCCTTGGGCAATTTGA 672 0.4717 METGRIQGPWGFRSLSKVVLCTISGALTVCFAIAGALTGAIAGALAAKATKSGLLRGVSLGAIAGSILSVEVLEASRAYWCMEQTGSRGASSMADFIEELVRGRLVEESLTPAILTAYNLQFEQVGIANTGYDEIHDVHGLVAPRGLSGDSLKRLPHHMISKDMKADNTCCAICLQDIEVGEIARSLPRCHHTFHLICVDKWLVKNDSCPVCRQNVQLVPWAI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00248 223 Pfam Ring finger domain 171 213 IPR001841 -
Gma05g00248 223 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 10 215 IPR044523 -
Gma05g00248 223 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 10 215 - -
Gma05g00248 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 218 IPR013083 -
Gma05g00248 223 SMART ring_2 171 212 IPR001841 -
Gma05g00248 223 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Gma05g00248 223 SUPERFAMILY RING/U-box 152 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00248 Gma-Chr5 2236525 2239991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00248 14 217 C3H Transcription Factor Family AT1G74410 55.610 8.04e-75 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00248 - - gmx:100800105 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00248 05 2236525 2239991 Gma05g00248 05 2236525 2239991 ECH
Gma17g00957 17 8163139 8166972 Gma05g00248 05 2236525 2239991 GST