Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00246 ATGGGTGAAGAGCGATCCGAGATAGTGTTCTTCGATGTGGAGACCAGCGTTCCGACCCGGGCGGGGCAGGGTTTTGCGCTTCTGGAATTCGGCGCCATTTTGGTTTGCCCCAGGACGCTCACGGAGCTCCGCGATTACTCCACTCTCGTCCGCCCAGCCAACCTCTCCGTCATCACCCCCTTGTCCGAGCGCTGCAACGGCATCAACGCCGCCGCTGTCTCCGCCGCCCCTACCTTCGCCGACATTGCTCACCTCGTTTACGACCTCCTCCACGGGAGGATTTGGGCGGGGCATAACATCATAAGATTCGACTGTGTTCGGATTAGAGATGCGTTTGCTGAGATTAATCAGCCACCGCCTGAACCTAAGGGGACCATTGACTCGCTGGTTTTGTTGACTCAAAAGTTTGGTAGAAGAGCTGGTGACATGAAGATGGCTACTCTTGCTACTTATTTTGGGCTTGGACGCCAGACACATAGGAGCTTGGATGATGTTCGGATGAATCTTGAAGTCCTCAAATACTGTGCAACAGTTCTATTCTTGGAGTCAAGTCTCCCAGATATATTCACTGCAAATAGTTGGGTTTCACCAAATGCTACTACAAGAAGCCGCAGTAATGGGAAATCTCCATCACAGTGGGGCTTATTAAATATTAATAAAGATTCTGTATTATCATCTCCTGCAACTGAATCCAAAGACAAAAATCGTCCAATAATTTCTTTTGCATTGAGCAGCCCAAAAGGGAATGTCTCGAATATTGCAGATCCTAACATGGATCAATCAGATCCTTTTAACTTGAGCACTCTTGAGGCTGAAATAAAAAGAGAATCCATTAAGTCAGATGTCGCCTTGGAGGAAAAACCCATGCAAGAGTCAACTGATTTGGCTTCCTCATCTTCTGTATCTCAGCCTTGCAGCAGCTCTATTGCTGTTTTGGAACCTGATGGAATATGTATACCTTCTATTGATGCATCTCTTGTTCCATCTTTTCGTGGCAGTCAAAGAATAGAGTTACTGCATGAAGGTTTCCTGTTTCAGCTTCATTGTACTGATTTGAAAGTGCGGTTTGGAATAAACTCAAAGTTTTTTGATAGTGCTGGCCGGCCACGATTGAGTTTTGTGGTTGATCCATCACCAAGTCTATGTAATGTTCTTGATGCATGTGACCGTGTAGCACAGAAGTTAACCGTGGATTCTGGTAGCAGCTCTGATTGGAGGCCTGTTGTTATTAGGAAAGAAGGCTTCTTCAACTATCCTACTGTCAGATTACACATACCTACTGCAGTAGTGGCAGACATTGCTATTTATGCCACGGAAATATATCAAAGAGAATCATCTGGAACAGTGCAAAGACTTCTCTTCAGTAAGTTTGATGCTGCAGAACTTGGTTCCTTGTTCATGCCTGGGACATTTGTTGATGCCGTCTTCTCCTTAGATCCCTCCCACCACCATCTATTTGTACAGGGAAGAGTGGTCACGATGGATGCTGAAACTGAGACTGAGGAACTTATAAATTTGAACGATAAATCAAGTAACTTTGGTGGGAATAATAGTAAGAGTGGCGATGGATTCATTGACAGAAGCAAAGTGAGGATTTTGTTGTGTGATAACGATTCCAAGAGTTCTGAAGAGGTTTTTGCTCTTCTTTTGGGATGCTCTTACCAGGTTACTTCAGTAAGGTCAGCTAGGCAAGTAATTGATGCACTGAATGCGGAGGGGCAATATATAGATATCATACTAGCTGAAGTTGACCTTCCAATAAAGAAAGGCATGAAGTTGTTGAAGTACATAGCAAGGGATAAAGAATTGTGTCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTTTCCATTGTTGTAAAGTGCTTGAGGCTTGGAGCAGCAGATTACCTAGTAAAGCCTTTACGCACAAATGAACTACTAAATTTGTGGACACACATGTGGAGAAGGAGGCGCATGCTTGGACTTGTAGAGAACAACATCTTGACTTATGACTTTGATCTGGTAGCATCAGATCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAAAGAAGCACTAATCCAGAGACAGGagtatcaatccaacaggaacaagagGCTAGTATTGCCACCATTGCTGCTGTGGTGGTGGAGCTTCCCAATGCTCTTCTATCAGAATATCAGCCTGATGTGCCTGGAATAAGTGATCGTCGAACAGGACATTTTTTATCTGGTCCAAAGAAGAGTGAACTGAAGATTGGAGAGTCATCAGCCTTTTTCACCTATGTCAAAGCAACAACACTTAAGAGAAACGTTGAAGAGAGTGCTCATGTTGACAATACTACTACTACAGAAGTCAGGGTGGAAGATATGAATCAAGCATGTACTGAACAGGGGGGTAATGACCTTAAAACACATGAAAATGAAGAAATGTTTGAAAACCATTCACAAGATGACTTACCCAGCAGCAATAGTATCCCCGATTCTTTCTCTATTGAGAGATCTTGTACTCCACCTGCATCGACGGAAGTTTCACAGCAAAAGCATTACAAGGAAGAACATTCTCAGGGAGTGGTGCATCCAAGAAATGGTAGTCATGGTTCTGGGCCTGCTCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCACGTTATGATGCCATCATCAGCACAACTGTATCAAAAGAATATCCAGGACCTGCAGAGTCATGCTGGTTCTTCCATGATTGCACAGTACAATCATCTTCCCCAATGTCCTCCTCATGCAAATGGGATGACATCCTTCCCATATTATCCGATGAGCATTTGCTTACAACCTGGTCAGATTTCTACTAATTCTTGGCCATCATTAGGAAGTTCAAGTTCATGTGAAGTAAAAATAAGTAAAGTTGATAGGAGAGAAGCAGCATTGGTGAAGTTTAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAACAGAAAACGGCTCGCAGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTCAGAAAGTTGAATGGTATTAATGTGGATCTTAATGGGCAACCTGCTTCCACTGATTATGATGAAGATGATGAAGAAGAGGAAGACAATCATGGAGCAAGAGATTCCTCTCCTGAGGATGCTTGA 3159 0.4321 MGEERSEIVFFDVETSVPTRAGQGFALLEFGAILVCPRTLTELRDYSTLVRPANLSVITPLSERCNGINAAAVSAAPTFADIAHLVYDLLHGRIWAGHNIIRFDCVRIRDAFAEINQPPPEPKGTIDSLVLLTQKFGRRAGDMKMATLATYFGLGRQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTANSWVSPNATTRSRSNGKSPSQWGLLNINKDSVLSSPATESKDKNRPIISFALSSPKGNVSNIADPNMDQSDPFNLSTLEAEIKRESIKSDVALEEKPMQESTDLASSSSVSQPCSSSIAVLEPDGICIPSIDASLVPSFRGSQRIELLHEGFLFQLHCTDLKVRFGINSKFFDSAGRPRLSFVVDPSPSLCNVLDACDRVAQKLTVDSGSSSDWRPVVIRKEGFFNYPTVRLHIPTAVVADIAIYATEIYQRESSGTVQRLLFSKFDAAELGSLFMPGTFVDAVFSLDPSHHHLFVQGRVVTMDAETETEELINLNDKSSNFGGNNSKSGDGFIDRSKVRILLCDNDSKSSEEVFALLLGCSYQVTSVRSARQVIDALNAEGQYIDIILAEVDLPIKKGMKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILTYDFDLVASDPSDANTNSTTLFSDDTDDKSKRSTNPETGVSIQQEQEASIATIAAVVVELPNALLSEYQPDVPGISDRRTGHFLSGPKKSELKIGESSAFFTYVKATTLKRNVEESAHVDNTTTTEVRVEDMNQACTEQGGNDLKTHENEEMFENHSQDDLPSSNSIPDSFSIERSCTPPASTEVSQQKHYKEEHSQGVVHPRNGSHGSGPAQHAYPYYISGVVNHVMMPSSAQLYQKNIQDLQSHAGSSMIAQYNHLPQCPPHANGMTSFPYYPMSICLQPGQISTNSWPSLGSSSSCEVKISKVDRREAALVKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGINVDLNGQPASTDYDEDDEEEEDNHGARDSSPEDA 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00246 1052 Pfam CCT motif 972 1014 IPR010402 GO:0005515
Gma05g00246 1052 MobiDBLite consensus disorder prediction 1018 1052 - -
Gma05g00246 1052 SMART REC_2 530 645 IPR001789 GO:0000160
Gma05g00246 1052 Gene3D - 1 178 IPR036397 GO:0003676
Gma05g00246 1052 SUPERFAMILY Ribonuclease H-like 7 177 IPR012337 -
Gma05g00246 1052 Pfam Exonuclease 9 172 IPR013520 -
Gma05g00246 1052 SUPERFAMILY CheY-like 528 656 IPR011006 -
Gma05g00246 1052 MobiDBLite consensus disorder prediction 815 875 - -
Gma05g00246 1052 SMART exoiiiendus 7 181 IPR013520 -
Gma05g00246 1052 Gene3D - 530 728 - -
Gma05g00246 1052 ProSiteProfiles CCT domain profile. 972 1014 IPR010402 GO:0005515
Gma05g00246 1052 CDD DEDDh 9 173 - -
Gma05g00246 1052 ProSiteProfiles Response regulatory domain profile. 531 649 IPR001789 GO:0000160
Gma05g00246 1052 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 495 1037 - -
Gma05g00246 1052 Pfam Response regulator receiver domain 532 643 IPR001789 GO:0000160
Gma05g00246 1052 MobiDBLite consensus disorder prediction 678 707 - -
Gma05g00246 1052 MobiDBLite consensus disorder prediction 821 849 - -
Gma05g00246 1052 PANTHER TWO-COMPONENT RESPONSE REGULATOR 495 1037 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00246 Gma-Chr5 2218385 2229875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00246 519 1051 Response Regulator Gene Family AT5G61380 50.718 6.97e-176 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gma05g00246 RNase_T 1e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00246 K12127 - gmx:100786522 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00246 05 2218385 2229875 Gma05g00246 05 2218385 2229875 ECH