Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00239 ATGGCGCTGTTCAGAAGGTTCTTCTACCGGAAGCCGCCGGATCGGCTTCTGGAGATTTCCGAGAGAGTTTATGTTTTCGATTGCTGCTTCTCCAAGGATGTCTTGGAAGAAGATGAATACAGAGTGTATATGGGGGGGATTGTGGCTCAGCTACAGGATCACTTTCCAGATGCTTCTTTCATGGTATTCAACTTCCGAGAAGGGGAGAGACGCAGCCAAATCTCAGACATATTTTCTCAGTATGACATGACAGTTATGGAGTACCCTCGGCAATATGAGGGTTGCCCCCTTCTGCCTTTAGAGATGATCCATCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCTTTGGAGGGGCAGCAGAATGTGCTTTTGATGCACTGTGAAAGGGGTGGTTGGCCCGTGCTGGCATTTATGCTAGCAGGTCTTCTGTTATACCGGAAACAGTACAGTGGGGATCAGAAGACTCTTGAGATGGTCTACAAGCAAGCTCCAAGAGAACTACTACACTTTTTATCTCCTTTGGATCCACAGCCTTCTCATTTAAGATATCTTCAGTATATTTCCTGGAGACATTTGGGTTCTGAGTGGCCACCATCGGAAACACCCTTATATTTGGATTGTCTGATTCTTAGAGTCCTTCCATTATTTGATGATGGAAAAGGTTGCAGGCCTGTTGTACGTGTTTATGGTCAGGACCCTTCAATTCCTGCCAATAGAAGTTCAAAGCTACTTTTTTCATCTTCAATATCCATAAAGCATGTTCACCACTACCTACAGGCAGAGTGTATGCTCGTGAAAATTGACATCCGTTGTCGTGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAATGAAGATTTTGTTCATGAGGAGATGATGTTTAGAGTTATGTTTCATACTGCATTTGTGCGGTCAAATATTTTGATGCTGAACCGTGATGAAATTGATATTTTGTGGGAGGCAAAGGACCTATTTCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATCTAACCACAGTCACGGTGAGTGAAGATGCAAATGAGACTGAGAGTGCCGAGACAGAAAGTGCTTCACCTGAGGAATTCTATGAAGTAGAAGAGATTTTCAGCAATGTAATTGATGCACAGGAAGGTAAGACAGAATTTGATTCACAAGTTTTTCATGAAAATGCAGTGGATGTTGAAACTCATAAAGAGGTCTGGAGGCAAGAGTCGGATCCTCATACTTTTGAGGATTGTACACCCGATGACAGGATTCCTAAGCAGGTTGACAAGATGGATTCTGGTATTAATGCAGTGAAAGATATCTCCATTGATGATGTGCACTATAAATTTGATGGGAGCATGGATTCAGATCCTCATGCAGTGAAGGACATTGCTGTGGATGATGGAGAAATTAAGTCAACTTCCACTACATTTATTTCTGATACGATGAAACCTCCTCTGGAAACAAAGGAAGTCAACATGGATGTGCACCAAGAATTAGCAGTTATGCAAAATGAATATGATGAAGATAAGGAGGCAACAGAAAAGGAATTAGACTCCAAGGCAGGCCACCAGATGCCTGATTTGTCTGAACAAAAATCTGGTAAACTACTTTCATCTACTGCCAAGAAACAACCTCCATCTAACTCGAAGCCAGTTGGAGATTCAATTGCAGCAAAGCCAAAGATTAAACAGCAAGATACCCATGGTTTTCAGGCAAAACAAGCTAAGCCAAATGTAGTAACTAGGTGGATTCCTTCTAACAAGGGTTCTTATACAAATTCAATGCATGTCTATTATCCACCATCAAGGAATAATAGTGCACCAGCTGCGCTGACAAATTTCTCCTCCTCAAAGGAGAAAATGGAAGATGCCAAAACAAGATCTTTATCTGCTCCTGTTGTCTCTGCAGTCGTTTCTCTTGACAAGACAAATGACCTGAAAAGTCGGAAGGTTGCCACTTCAAAATCTTCTGCCTATATAGCAGCAGAAATGGATGAAAAATGTCCACCATTATCATTGCTGCCAATTAAAGAGACATCTTTTCAGTCAGATACTCAAGCCCAAGAACAGAGCTCAGAGCAAGGGCTACAGCCTCCCCCACCACCTCCCCTTCCATCTCAAAGTAGAATCCCTTCACATGTTTTTGAATCCTTATCATTAAAGGATGATGTATCAGCTCAAGATTCTCCATCTCAACTGTTATCACCATCTTCTTTGGGTGGAAAGGGGTCCACCATGGTGCCACCACCACCTTCAAGTTTAACGTCATTTACGAGACAACCTGCAACTTTTCATCCTTCCCCTccacccccaccccaacccccacccccgcccccacctccacccccaTTTTTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCACCCCTTCCTCCTTCGAGTGGAGCCCCACCTCCACCTCCTCCAATGTATGGAACCCTACTTGCCCCACCTCCTCCAATTCGTGGAGCACCACCACCACcaccgcctcctccaatgcatggagcaccacctccaatgtatggagcaccacctccaccaccacctcctagtgggcgaggaccgcctcctccaccaccacctcctggtgggcgaggaccacctcctccaccaccacctcctggtgggcgaggaccacctcctccgcctcctccaatgtatggagcaccacctccaccgccacctcctggtggtcgaggaccacctcctccacctactcccggtggtcgaggtcctcctcctccacctccccctggtgTTCCTGGGGCTCCTAGACCTCCTGGGGGTGGACCTCCACCACCTCCGCCCTTAGGTGCAAAAGGTGCAAATGTTGGAGCTGATCCAAGAGGGAGGGGACGTGGGTATGCACGCCCTGCAGGAGCTGGTGCAATGGCACCCAAACGGTCCTCCTTAAAGCCTTTGCATTGGAGCAAGGTTACAAGGGCACTACAAGGAAGTTTATGGGAAGAATTACAAAGACATGGAGAACCGCAAATTGCACCAGAGTTTGATGTTTCAGAGCTAGAGAAGCTTTTCTCTGCAAATGTTCCAAAACCTACTGATTCTGGCAAATCTGGAGGGCGGCGCAAGTCTGTTGGAGCTAAAACTGATAAAATCACCTTGGTTGATCTAAGGAGGGCTAATAATACTGAAATTATGCTCACCAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTACTAGCTTTGGATGAGTCGGTATTGGATGTTGATCAAGTGGAAAATCTCATTAAGTTTTGTCCTACCAAAGAGGAGATGGATCTTTTGAAGGGATACACTGGTGACAAGGAGCTTTTGGGGAAGTGTGAACAGTTTTTTTTGGAGTTGATGAAGGTGCCAAGAGTGGAGTCAAAATTAAGAGTATTTGCATTCAAGATTCAGTTTAATTCTCAGGTTATGGAATTTAAGAAGAGTTTAAACACTGTGAACTCTGCCTGTGAAGAGGTCCGGAATTCTGTTAAACTGAAGGACATAATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGGTCCTGGCTGATAAGTCGCCCGGGCTCCTTGATTTCCACCTAGACCTTGTAAGCCTGGAATCTTCCACTAAGATACAATTGAAGTCATTAGCAGAAGAGATGCAGGCAATCATCAAGGGATTAGAAAAGGTTAAACAAGAATTTGCTGCATCTGCAAATGATGGACCTGTCTCTGAAGTTTTCCATAAGACATTGAAAGAATTTATAGCTGTATCTGAGTCAGAGGTAGCATCTCTAACAAACCTATATTCTGTAGTGGGTAGAAGTGCTGATGCACTTGCACTATATTTTGGTGAGGATCCTGCTCGTTGCCCAATGGAGCAAGTTACCACAACCCTGCTAAATTTTATACGATTGTTTCGGAAAGCACATGAAGAGAATATCAAACAAGCAGAGTTAGAGAAGAAGAAAGCTGAGAAAGAGGCTGAAATGGAGAAGGCCAAGGGCATTAACTTGACAAAGAAGGGTGCAAAAGATAGTTGA 4152 0.3945 MALFRRFFYRKPPDRLLEISERVYVFDCCFSKDVLEEDEYRVYMGGIVAQLQDHFPDASFMVFNFREGERRSQISDIFSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGDQKTLEMVYKQAPRELLHFLSPLDPQPSHLRYLQYISWRHLGSEWPPSETPLYLDCLILRVLPLFDDGKGCRPVVRVYGQDPSIPANRSSKLLFSSSISIKHVHHYLQAECMLVKIDIRCRVQGDVVLECIHLNEDFVHEEMMFRVMFHTAFVRSNILMLNRDEIDILWEAKDLFPKDFKAEVLFLDADAVIPDLTTVTVSEDANETESAETESASPEEFYEVEEIFSNVIDAQEGKTEFDSQVFHENAVDVETHKEVWRQESDPHTFEDCTPDDRIPKQVDKMDSGINAVKDISIDDVHYKFDGSMDSDPHAVKDIAVDDGEIKSTSTTFISDTMKPPLETKEVNMDVHQELAVMQNEYDEDKEATEKELDSKAGHQMPDLSEQKSGKLLSSTAKKQPPSNSKPVGDSIAAKPKIKQQDTHGFQAKQAKPNVVTRWIPSNKGSYTNSMHVYYPPSRNNSAPAALTNFSSSKEKMEDAKTRSLSAPVVSAVVSLDKTNDLKSRKVATSKSSAYIAAEMDEKCPPLSLLPIKETSFQSDTQAQEQSSEQGLQPPPPPPLPSQSRIPSHVFESLSLKDDVSAQDSPSQLLSPSSLGGKGSTMVPPPPSSLTSFTRQPATFHPSPPPPPQPPPPPPPPPPFFXXXXXXXXXXXXPPLPPSSGAPPPPPPMYGTLLAPPPPIRGAPPPPPPPPMHGAPPPMYGAPPPPPPPSGRGPPPPPPPPGGRGPPPPPPPPGGRGPPPPPPPMYGAPPPPPPPGGRGPPPPPTPGGRGPPPPPPPGVPGAPRPPGGGPPPPPPLGAKGANVGADPRGRGRGYARPAGAGAMAPKRSSLKPLHWSKVTRALQGSLWEELQRHGEPQIAPEFDVSELEKLFSANVPKPTDSGKSGGRRKSVGAKTDKITLVDLRRANNTEIMLTKVKMPLPDMMAAVLALDESVLDVDQVENLIKFCPTKEEMDLLKGYTGDKELLGKCEQFFLELMKVPRVESKLRVFAFKIQFNSQVMEFKKSLNTVNSACEEVRNSVKLKDIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLADKSPGLLDFHLDLVSLESSTKIQLKSLAEEMQAIIKGLEKVKQEFAASANDGPVSEVFHKTLKEFIAVSESEVASLTNLYSVVGRSADALALYFGEDPARCPMEQVTTTLLNFIRLFRKAHEENIKQAELEKKKAEKEAEMEKAKGINLTKKGAKDS 1383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00239 1383 Gene3D Formin, FH2 domain 988 1381 IPR042201 -
Gma05g00239 1383 MobiDBLite consensus disorder prediction 805 947 - -
Gma05g00239 1383 MobiDBLite consensus disorder prediction 609 631 - -
Gma05g00239 1383 MobiDBLite consensus disorder prediction 536 556 - -
Gma05g00239 1383 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Gma05g00239 1383 SUPERFAMILY Formin homology 2 domain (FH2 domain) 921 1363 - -
Gma05g00239 1383 SMART PTEN_C2_2 198 338 IPR014020 -
Gma05g00239 1383 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Gma05g00239 1383 MobiDBLite consensus disorder prediction 727 767 - -
Gma05g00239 1383 MobiDBLite consensus disorder prediction 506 530 - -
Gma05g00239 1383 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Gma05g00239 1383 Pfam Formin Homology 2 Domain 974 1343 IPR015425 -
Gma05g00239 1383 Coils Coil 1250 1270 - -
Gma05g00239 1383 Gene3D - 205 336 - -
Gma05g00239 1383 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Gma05g00239 1383 ProSiteProfiles Formin homology-2 (FH2) domain profile. 969 1369 IPR015425 -
Gma05g00239 1383 PANTHER FORMIN-J 1 887 - -
Gma05g00239 1383 PANTHER FORMIN-J 880 1376 - -
Gma05g00239 1383 Coils Coil 1344 1373 - -
Gma05g00239 1383 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 187 IPR029021 -
Gma05g00239 1383 MobiDBLite consensus disorder prediction 768 791 - -
Gma05g00239 1383 MobiDBLite consensus disorder prediction 505 581 - -
Gma05g00239 1383 MobiDBLite consensus disorder prediction 676 976 - -
Gma05g00239 1383 SMART it6_source 531 1383 IPR015425 -
Gma05g00239 1383 MobiDBLite consensus disorder prediction 681 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00239 Gma-Chr5 2181336 2194559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00239 1 640 FH2 protein (formin) Gene Family AT5G07740 61.420 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00239 - - gmx:100785475 1480.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00239 05 2181336 2194559 Gma05g00239 05 2181336 2194559 ECH
Gma17g00701 17 5963904 5974293 Gma05g00239 05 2181336 2194559 GST