Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00238 ATGGGGTGTGTGGTTGCGAAGCAGGCGGTGTCAGTGACGCCTGCAATTGAGCACTCGGTTGAGTCGGAGAAGAACAGGAAGAAGAAGACTGAGTCAGTGGGGGCAAGTAGGAGCGAGTTGGGTGAGTCGGGGAGAGCGAGTTCCAATGGTGGAAGTGAGTCTCTGAGCTTCAGGTTGGGAAACCTGAGCAAGTACGTGGAGGGAGAGCAGGCGGCGGCGGGATGGCCGGCGTGGCTCAGCGCCGTCGCGTGTGAGGCCATTCACGGTTGGGTGCCTCTCCGAGCTGACGCGTTTGAGAAACTTGATAAGattgggcagggtacatatagcagtgttttccgagcaaaggagattcagaccgggaagatagtggctttgaagaaggtgaggttcgacaattttgagccagagagtgtgaggtttatggcacgagaaataatgattcttagaaggcttgatcatccaaacatcattaaattggagggcttgattacttctagattgtcttgtagcatataccttgtgtttgagtacatggaacacgacatcacagggctcttggctagaccagaaatcaagtttagtgaatcacagatcaaatgctacatgaaacagttgttatctggcattgagcattgtcactcgcgaggtgtgatgcaccgggacatcaaaggatcaaatcttttggtgaataatgaagggatattgaaggtggcagattttggattggcaaatttctccaattctgggaacaagcagcccctcactagtcgtgttgtcaccttatggtaccgtcctccggaacttttgctcggttcaacagcttacggtgcatccgtggatctctggagtgttggctgtgtatttgcagaattactaattgggaagcctatacttcaggggagaactgaggtagttgagcaattgcacaaaattttcaagctttgtggctccccacccgaagaatactggaaaaagaccagacttcctcatgcaacattgttcaagccacaacaaccatatgatagttgcctccgagagacatttaaagattttcatgcatccagtgtaaatcttctacaaactcttctttctgtcgaaccaagcaaacgtgggactgcctcctctgctctctcattggagtatttcaaaacaaaaccttatgcatgtgacccatcaagtttaccaatatacccgcctagcaaggagattgatgcgaagaatgaggaagaatcGAGAAGGAAAAAGATTGGTGGGCGAGCTTGCAGAGCAGAATCAAGAAAACCATCAAGAAATCCACTAGCACTCAGTAAATTAGCCCCAGCAGAGGATTTGTCAAGTCAAACTCAAACTTCCCAAAAGATGGATGATAGATCTGTCCACATCATTAAAGAAGAGAACACTAACACATGTGAGGAGGCACCAAAGCAGTCTAGTGGTAAACCAGAAGATGCTTCTTCTTATATGAAGAATGCATCTCAAGTAGATATTCCCTTTCCTGGACCATTGCAAGTTTCAAAATCAAGTGGCTTCGCATGGGCAAAAAGGCGTAGAGATGACACTTCAGTTAGATCCCACAGTCGGTCTATTTCTAGAGGATATATCTTTAATTCATCAGAAACTTCTACACTAAATTCAAGGAATAATTCTGAATCCAGAAACCATGAAAATAAGAAATTTTTCGGGGCACATGCCAATTCTAGGGGCCATGACCTACTTGAAATTTCTAAGCTTGCCATGCAAAATCAATGGAGTAAGTTTGATCGTCTAGATTCGTTTGATACTTGTGACGAATACCATTCACAAGAACTGTCCGTGGCACTTTATAACAGGCAAGATTCACTATCCAAGAGAAGTAACCTGAGTTACCAGGATCAAGCAGAAAAGGTAGAGTTTTCAGGGCCACTACTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAGACACGAGAGTCATATCCGGCGTACGGTCAGAAGATCATGGTTTCAGAGAGGTAAGAAGCAAGGGAAGTAA 2016 0.249 MGCVVAKQAVSVTPAIEHSVESEKNRKKKTESVGASRSELGESGRASSNGGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVACEAIHGWVPLRADAFEKLDKIGQGTYSSVFRAKEIQTGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLARPEIKFSESQIKCYMKQLLSGIEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTAYGASVDLWSVGCVFAELLIGKPILQGRTEVVEQLHKIFKLCGSPPEEYWKKTRLPHATLFKPQQPYDSCLRETFKDFHASSVNLLQTLLSVEPSKRGTASSALSLEYFKTKPYACDPSSLPIYPPSKEIDAKNEEESRRKKIGGRACRAESRKPSRNPLALSKLAPAEDLSSQTQTSQKMDDRSVHIIKEENTNTCEEAPKQSSGKPEDASSYMKNASQVDIPFPGPLQVSKSSGFAWAKRRRDDTSVRSHSRSISRGYIFNSSETSTLNSRNNSESRNHENKKFFGAHANSRGHDLLEISKLAMQNQWSKFDRLDSFDTCDEYHSQELSVALYNRQDSLSKRSNLSYQDQAEKVEFSGPLLSQMHTVDELLERHESHIRRTVRRSWFQRGKKQGK 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00238 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Gma05g00238 671 Gene3D Phosphorylase Kinase; domain 1 85 180 - -
Gma05g00238 671 MobiDBLite consensus disorder prediction 17 53 - -
Gma05g00238 671 PANTHER CELL DIVISION PROTEIN KINASE 30 664 - -
Gma05g00238 671 MobiDBLite consensus disorder prediction 442 456 - -
Gma05g00238 671 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Gma05g00238 671 ProSiteProfiles Protein kinase domain profile. 98 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00238 671 MobiDBLite consensus disorder prediction 472 488 - -
Gma05g00238 671 SUPERFAMILY Protein kinase-like (PK-like) 91 390 IPR011009 -
Gma05g00238 671 CDD STKc_CDK9_like 98 383 - -
Gma05g00238 671 MobiDBLite consensus disorder prediction 403 427 - -
Gma05g00238 671 SMART serkin_6 98 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00238 671 MobiDBLite consensus disorder prediction 19 35 - -
Gma05g00238 671 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 30 664 - -
Gma05g00238 671 MobiDBLite consensus disorder prediction 457 471 - -
Gma05g00238 671 Pfam Protein kinase domain 98 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00238 671 MobiDBLite consensus disorder prediction 397 488 - -
Gma05g00238 671 Gene3D Transferase(Phosphotransferase) domain 1 181 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00238 Gma-Chr5 2162848 2167750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00238 90 443 Core Cell Cycle Gene Families AT5G10270 48.919 1.55e-113 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma05g00238 Pkinase 3.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00238 - - gmx:100784406 1316.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00238 05 2162848 2167750 Gma17g00967 17 8245156 8251561 ECH
Gma05g00238 05 2162848 2167750 Gma05g00238 05 2162848 2167750 ECH
Gma17g00967 17 8245156 8251561 Gma05g00238 05 2162848 2167750 GST