Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00221 ATGGAAGGAGATCATCGAATTCATCAAGAATTGAAACACGCGTGCAAGTTCTGCGGCAAGTGCTTCCCTTGTGGCAGATCCTTGGGGGGTCACATGAGGTCTCATATAACCAACTTTTCATCTGAGATGAATGAAAAAGAAAAGCTTTCATCTTCACACAACAATGGTGGAGACAAGGATTCTGAAGCTGCTGCTGCAGCTAACACTGCTGGCTATGGTCTCAGAGAGAAACCCAAGAAGACTTGGAGAATCTCAGATTATTCAAGCGAAGACCCTTTGGTGTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGGGTTCCAGTCTTGGAAGGCCTTGTTTGGCCACATGAAATGCCATTCTGAGAAAGAGAGAGTTTCCAACAGCTTGGAAGATCAAGATTCTTGGACTAATGCTAAGGTGGTTATGGATAGCCAATCTGATAACGAAGCAACTGCTCCGAATAAGAGAAGAAGGTCCAAGAGAAGAACAAGGTACACGGTGGttgcttcttctgcagcagcagcagcagcaacaacaactTCTTCTGTTGTATCTTTTGCCAATCCTTCTTCTTCTCTCTCTGAGGCTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATGTGAGTCCTTGGAGTGGTCCTCATTCTGTTGCCGAGTCCTCTGACAATAACTCTGCTTATTTCGAAGCTCGATCTTCGGTTCGAACTAATTTGATCACCAAATTTGATCAAGCAAAACTGATCAAGCAAAGTGATAACAAGTGGGAGGTTGGCAATTCAGAAAATCCCAACTCAACCAGAGGTAAGAGTTCACAACTTTTGACGACTACTACTGCTACTACTATTACTACTGAGATTCCTGAAAATGGATTTAGAGTGAACAAAAATGGAGTTTCCAATAAAGGGTACGAAAAGGCCTACAAGTCTGAGCTTGAGTATGTATCGGCATTGGAGGATTCTGAAGGTGAACATAGGAGGAGCAGAAGAGTCAATGGAACAGAATCAGCTTTATCAAAGTCGGTTACAACTACTGGCAAAAAGTACAGCTCAATCAAGACAAAGTTTTCAGGTTCTGAATTGAAGTCAAATAAGAACTGGATGGACAAGGCTTCAGAAGCTGAATCTAGCAAGAACTCTAACAAGAGAGGCAAGTTTGAGTGTACCACTTGCAACAAAATTTTCCACTCATACCAAGCACTTGGAGGCCATAGAGCTAGCCACAAGAAGATCAAAGGATGCTTTGCTTCAAGGAATGAGAGCAGTGAGAACAGCATTGAAACTGATCTCTCTCCTGACCCAATAATAACTGAAAACAAGCTCATGAAGAACGGTGACAGTGAGTGTGTGGTGGAACATCAACATGGTGCTAGTTTTCATAATGAGGTGGAAACAGTTAATGAGTCCAAGAAGAGCAAGGGGCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGCCAAGCCTTGGGTGGCCATAAGAGATCTCATATGGTTGGTGGGTCTGAGAGTAGAAGCTTTCAAACAATTGTGCTTCAGGAACCAGTGGCAGAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCTGCTACTGAGGAAGAAAGCAATAGCCATGCTGACTCTAACAGTAACAGACCCTGGTGGATAGTAGAAGACAACCACAAACAGGAGGCACTGGATATGTATCTTCTTCTTCCTCTTCAGGTGAGACGGAAATGCAACTCGGAGGCGCGGCAAGGAAGGTCTACCACCGGCATTGCTTTTCCGATCAGTTTTAAGCTCCCCACTTTCTGGTACCTTTCTTCGTCCTATGCTACAAGGCGTAGGAGAGAGCAGCATAGAAAAGAGAAGGACGTTTTACAAAGTTCTCAATCCCAAAGCATTCAACCAATCCAGATGCTAGAACAATGTGAGAAGTCAAAATCAGAAGCTCATGCAGAAGATAAGAAACACATTCAGAGGTTGGAAAAAGAGCTTCTGAACTGTTCTCAAGAAATAGATTATCTTCAGGATCAACTCAGTGCAAGGAATGCAGAGGTGAACTATCTGGAAGAGCATATTCACAACCTTGAATTGAAATTAGAGGGGATGGAAGATTTACAAGAGGAGGTTTTCAGATTAAGGGAGGAGCTGAAAAGATCTGAGTCAAAGCAATTTTCCTTGATCCAGGAACTAGATACTAAAGAAAAAGAATTAGAGAAGTCAGCTTTGTCCATAGAGAAACTAGAGGAATCATTTTCATCCATAACATTAGAGTCTCAGTTTGAAGTAGAGAGCATGAAGCTTGATATGATGGTCTTGGAACAGAGTCTTTTCGAGGCCAAGAAAATCCAGGATGAAACTCTAGATGAAAATAATAGAATGAGTAGATCAATTGAGGAGCTCCAGGTAGCATTGCAGGATGCCCAAAAAATTATCATCACTCTAAATGAAGAAATTAGGGAACTTGAAGAGAAGCTTGATACTGCCAACCAAAACTCTAGAATTTCTTCTCAAAAGGATGAATACTGGCTGGAAAACAAGGACAGATCACAACTCGAGACTCAATCTTCCTTGAATGTGCGAGGCAACAACTCTACCATGCAGGAGGACATAAGCACTTATGAAGTATGTGGTCCACATGTTGGAAGATTGGCAATGATCTTAGATCCAGCTGCAGATTTAAAAGGGAAGATGGAGATGTCACAACAGATCCAAGAATATGAATGTCTTATCAAGAAACTTAAGGAAGAATTAAGAGAGGAAAAGTTGAAGGCAAAAGAAGAAGCAGAGGACTTAGTTCAGGAAATGGCAGAGCTAAGATACCAATTTACCGGTTCCCTAGAGGAAGAATGTAAGCGCCGTGCTTGCTTTGAACATGCATCCTTGCAAAGAATTGCCGAGTTAGAGGCTCAGCTTAAAAGAGAGCATAAAAACCCGTAA 2937 0.4171 MEGDHRIHQELKHACKFCGKCFPCGRSLGGHMRSHITNFSSEMNEKEKLSSSHNNGGDKDSEAAAAANTAGYGLREKPKKTWRISDYSSEDPLVFDKFCKECGKGFQSWKALFGHMKCHSEKERVSNSLEDQDSWTNAKVVMDSQSDNEATAPNKRRRSKRRTRYTVVASSAAAAAATTTSSVVSFANPSSSLSEAEQEQEEVAMSLMMLSRDVSPWSGPHSVAESSDNNSAYFEARSSVRTNLITKFDQAKLIKQSDNKWEVGNSENPNSTRGKSSQLLTTTTATTITTEIPENGFRVNKNGVSNKGYEKAYKSELEYVSALEDSEGEHRRSRRVNGTESALSKSVTTTGKKYSSIKTKFSGSELKSNKNWMDKASEAESSKNSNKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRNESSENSIETDLSPDPIITENKLMKNGDSECVVEHQHGASFHNEVETVNESKKSKGHECPICLKVFPSGQALGGHKRSHMVGGSESRSFQTIVLQEPVAEIRDFLDLNLPAATEEESNSHADSNSNRPWWIVEDNHKQEALDMYLLLPLQVRRKCNSEARQGRSTTGIAFPISFKLPTFWYLSSSYATRRRREQHRKEKDVLQSSQSQSIQPIQMLEQCEKSKSEAHAEDKKHIQRLEKELLNCSQEIDYLQDQLSARNAEVNYLEEHIHNLELKLEGMEDLQEEVFRLREELKRSESKQFSLIQELDTKEKELEKSALSIEKLEESFSSITLESQFEVESMKLDMMVLEQSLFEAKKIQDETLDENNRMSRSIEELQVALQDAQKIIITLNEEIRELEEKLDTANQNSRISSQKDEYWLENKDRSQLETQSSLNVRGNNSTMQEDISTYEVCGPHVGRLAMILDPAADLKGKMEMSQQIQEYECLIKKLKEELREEKLKAKEEAEDLVQEMAELRYQFTGSLEEECKRRACFEHASLQRIAELEAQLKREHKNP 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00221 978 MobiDBLite consensus disorder prediction 324 344 - -
Gma05g00221 978 Pfam C2H2-type zinc finger 480 503 - -
Gma05g00221 978 Pfam C2H2-type zinc finger 99 121 - -
Gma05g00221 978 Pfam C2H2-type zinc finger 13 35 - -
Gma05g00221 978 Pfam C2H2-type zinc finger 391 415 - -
Gma05g00221 978 Gene3D Classic Zinc Finger 3 124 - -
Gma05g00221 978 ProSiteProfiles Zinc finger C2H2 type domain profile. 391 418 IPR013087 -
Gma05g00221 978 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Gma05g00221 978 MobiDBLite consensus disorder prediction 43 71 - -
Gma05g00221 978 Coils Coil 896 941 - -
Gma05g00221 978 MobiDBLite consensus disorder prediction 141 164 - -
Gma05g00221 978 MobiDBLite consensus disorder prediction 368 387 - -
Gma05g00221 978 ProSitePatterns Zinc finger C2H2 type domain signature. 482 502 IPR013087 -
Gma05g00221 978 Coils Coil 730 750 - -
Gma05g00221 978 SMART c2h2final6 391 413 IPR013087 -
Gma05g00221 978 SMART c2h2final6 480 502 IPR013087 -
Gma05g00221 978 SMART c2h2final6 97 119 IPR013087 -
Gma05g00221 978 SMART c2h2final6 13 35 IPR013087 -
Gma05g00221 978 Coils Coil 790 838 - -
Gma05g00221 978 SUPERFAMILY beta-beta-alpha zinc fingers 13 119 IPR036236 -
Gma05g00221 978 ProSiteProfiles Zinc finger C2H2 type domain profile. 480 502 IPR013087 -
Gma05g00221 978 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Gma05g00221 978 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 9 564 - -
Gma05g00221 978 MobiDBLite consensus disorder prediction 261 281 - -
Gma05g00221 978 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 9 564 - -
Gma05g00221 978 Gene3D Classic Zinc Finger 388 502 - -
Gma05g00221 978 Coils Coil 650 677 - -
Gma05g00221 978 MobiDBLite consensus disorder prediction 324 338 - -
Gma05g00221 978 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Gma05g00221 978 Coils Coil 685 722 - -
Gma05g00221 978 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 35 IPR013087 -
Gma05g00221 978 SUPERFAMILY beta-beta-alpha zinc fingers 391 502 IPR036236 -
Gma05g00221 978 MobiDBLite consensus disorder prediction 371 387 - -
Gma05g00221 978 ProSitePatterns Zinc finger C2H2 type domain signature. 393 413 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00221 Gma-Chr5 2037205 2047346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00221 9 538 C2H2 Transcription Factor Family AT1G26610 35.283 1.17e-65 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma05g00221 zf-C2H2_6 1.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00221 - - gmx:102669916 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00725 17 6132722 6136522 Gma05g00221 05 2037205 2047346 GST