Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00200 ATGGCCGCCAAAACGGTAACCCCCGACGCCGTTTCGACGCTCCTCGCAAACCCTTCCCCCGATTCCACATCGGATCTCCCCGACATCGTCGTTCAAGTCCTCGATCTTAAGGCGACAGGCAATAAATACATGTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTCCTTCGGATATGCGCTCTCAGGTGCTCTCCGGGGCTATTCAAAACCTAGGTCTTATTCGCGTCCTTGATTACACTGTCAACGATATCCCCAATAAATCGGACAAATACCTTCTTGCCATTAAATGTGAAGCTGTATCTCCCGCGCTTGAAATGGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTTTTGAAGCCCAAAGTAGAGGGTGGAGTCAAGACTGAAGGTGCTGCTGCTGGGATTCTTCTCAAGCCCAAGCAAGAAGTGGTGACAAAATCTGCTAACCAGATTCTACGCGAACAGCATGGAAATTCGGCTCCTGCTGCACGCATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCGTTGAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTACCTATAAGAATGCTAGGGGTGATGGTTGCGTCTTCAATGTTGAATTGACGGATGAAGATGGTACTCAGATTCAGGCAACTATGTTTAATAATGCTGCAAGGAAATTTTTTGACAAATTTGTTCTGGGAAAGGTTTACTACATTTCAAGGGGAACTTTGAAAGTTGCTAACAAGCAGTTCAAAACTGTGCAAAATGATTATGAAATGACGCTAAATGAGAATTCCGAGGTGGAAGAGGTGGTCGGTGAAGCAAGTTTTGTTCCGGAAACAAAATTCAACTTTGTGCAGATTGATCAACTGGGTCCTCATGTCAATAAGTCTGAGCTTGTGGATGTTATTGGAGTTGTTAAGAATGTGTCTTCAACAATGAGCATTCGTAGGAAGAGTGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGACACGAAGAAGACAGTAGTTGTGTCCTTGTGGAATGAACTTGCAACTACCACAGGAGAAGAGCTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATTAAATCTCTCAAGGTTGGGGACTTCCAAGGTGTTTCTTTGTCAACTATAGGCAGAAGTGTGGTTCTGGTAAATCCAGACATACCCGAAGCAAAAAATCTCAGAAGCTGGTATGATTTTGAAGGCAAGGATGCTGCAATGGACTCTGTAGGCTCTGGTTCAAGTCCAATATCTAACAATGGGATTAGATCAGTGTACACTGATCGTATTCATCTTTCTGACATAATCTCAAACCCATCATTGGGAGATGGAAAGCCTGCTTTTTTCAGTCTTAGAGGACATATAACCTTCATAAAGCCTGATCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCTTTGGTTCTGGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAGGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTCTGTCTTCAATCAGGAAGCTGAGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCTCAACATCTTTTCCGGGTTAGTGTTACTCCGAACGAGTATAATGGCGAGAAGCGGCAAAGGATAACAGTTCGAGCAGTTGTTCCTGTTGACTTCGCTGCTGAGTCAAGGTTTATACTGGAAGAATTATCGAAGATGAGAGCATAA 1863 0.4289 MAAKTVTPDAVSTLLANPSPDSTSDLPDIVVQVLDLKATGNKYMFTANDGKTKLKAMIPSDMRSQVLSGAIQNLGLIRVLDYTVNDIPNKSDKYLLAIKCEAVSPALEMEIKSEESGSGILLKPKVEGGVKTEGAAAGILLKPKQEVVTKSANQILREQHGNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKFFDKFVLGKVYYISRGTLKVANKQFKTVQNDYEMTLNENSEVEEVVGEASFVPETKFNFVQIDQLGPHVNKSELVDVIGVVKNVSSTMSIRRKSDNESIPKRDITIADDTKKTVVVSLWNELATTTGEELLDIVDKSPVVAIKSLKVGDFQGVSLSTIGRSVVLVNPDIPEAKNLRSWYDFEGKDAAMDSVGSGSSPISNNGIRSVYTDRIHLSDIISNPSLGDGKPAFFSLRGHITFIKPDQAMWYRACKTCNKKVTESFGSGYWCDGCQKSDEQCSLRYIMVAKVSDGSAETFISVFNQEAEKIVGCSADDLDNLKLQEGEDNPYQMTLKEATWAQHLFRVSVTPNEYNGEKRQRITVRAVVPVDFAAESRFILEELSKMRA 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00200 620 SUPERFAMILY Nucleic acid-binding proteins 443 618 IPR012340 -
Gma05g00200 620 Gene3D - 429 618 IPR012340 -
Gma05g00200 620 Pfam Replication factor-A protein 1, N-terminal domain 6 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gma05g00200 620 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 7 617 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma05g00200 620 Pfam OB-fold nucleic acid binding domain 188 274 IPR004365 GO:0003676
Gma05g00200 620 Pfam Replication protein A OB domain 304 401 IPR031657 -
Gma05g00200 620 CDD RPA1_DBD_A 177 280 - -
Gma05g00200 620 Gene3D - 5 113 IPR012340 -
Gma05g00200 620 Gene3D - 174 282 IPR012340 -
Gma05g00200 620 CDD RPA1_DBD_B 310 416 - -
Gma05g00200 620 Pfam Replication factor-A C terminal domain 465 609 IPR013955 -
Gma05g00200 620 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 6 615 - -
Gma05g00200 620 CDD RPA1_DBD_C 454 617 IPR013955 -
Gma05g00200 620 SUPERFAMILY Nucleic acid-binding proteins 176 282 IPR012340 -
Gma05g00200 620 SUPERFAMILY Nucleic acid-binding proteins 293 420 IPR012340 -
Gma05g00200 620 SUPERFAMILY Nucleic acid-binding proteins 6 97 IPR012340 -
Gma05g00200 620 Gene3D - 288 428 IPR012340 -
Gma05g00200 620 PANTHER REPLICATION FACTOR A 1, RFA1 6 615 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00200 Gma-Chr5 1874954 1878277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00200 5 617 Core DNA Replication Machinery Family AT5G08020 68.078 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00200 K07466 - gmx:100777091 1200.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00200 05 1874954 1878277 Gma05g00200 05 1874954 1878277 ECH
Gma17g00743 17 6264091 6267119 Gma05g00200 05 1874954 1878277 GST