Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00182 ATGGAATCTTGGAGCTATGTCCCTGAAGAAAAGGAGTGTGTCTCCAATGAGGCACTCTCACCTCCCAACACTCTCGGGAGGAGTAAAAATTCTTTCTTGGGCTGGGAACTCAAAACCCCATGTGGTTTTTCCAACGACATGTTGGGTTTGGGTCACCACAGCATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCTGAAATGTTGGGAAAACACATGTCCGATGATCTAATTGGGAGTGTTCCAACCAGAAAGGTGAATGGTAATAGACAACAACAACACAGTGACAGAATCACTGGCACTGTTGTGGATGCCCCAAGTGGGTTTTCTCAAAGAGGGGACTCAAATTCAAAGCTTTCAAACTCAAATTCCCTCATTGATTTGAAGCTGGGTCGATTTGCTGACCATGGAGATTTCACTGATCGGGCGTTTTCCAAAGTTTTGTCTTCTTCTGAGTCATCAACGCCTCCTAAGAGAGTGAGAGCTTCAGGGTTGCACTCTCAGACTGCATATTGCCAAGTCTATGGCTGCAACAAGGATCTCAGCTCCTGCAAGGACTACCACAAGAGGCACAAGGTCTGTGAGGTTCACTCCAAGACTGCCATTGTTATAGTCAATGGCATTGAGCAAAGGTTTTGCCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGGAGCTGCCGAAAACGCCTTGCAGGTCATAATGAGCGTAGAAGAAAACCACAAATGGGTATTCACCCAGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGGGATAGCAGATTCCAGGGATCCATGCTAACTTCATCTTTTATCTGCCCAGAGATGCTTCCAAGTGGGGTCACGTGTTCTGAGAAATATGGTATGAGTGACTTTTGGAGACCTATCAAAGCAGAACACGGGACTGGTTTTAGGAATCTTTCCTCTATGGCTGCAACCAATGGACATCCTCCATCAAGATCTTTATTTCCATCATATAACGGAAATCAATTTCCTTTTCTTCATGAAAACAGTGCTACATCCACCACAGGAAGCATCTTCTGTGAGAGCAATAGCCCCTATCCATCTGCCCTTGGGGCCCAAAATTCTGGGTTGAGACCACTATTCCAGGACACTGTAGGAAATGAGAACTTCAATGTTTTTGATACCTCATCAACTGTTCAAGGATTGTCGGGGATTTCAGACTCTTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGGAATTCCCTTGGCTCACTCCTTGGTTATTCCAAGCAGTCATAGCCATAACTACAACATGAGTCAGGTCTCTGAAAAGATAGGAATAAGCTCACAGACTTCTTCAAGCCGAGTGTCAGATAGTTTTCCATCAGAACTAAATCATGCAGATGGAAGTCATCTCAGTCCTGTATTAATATCAGACAATAATTGTATTGTAAACTTTGATATGGCAGATGGTATCTTCCAAGCTTCAGATTACTTGAATGTAAAAGATCATCTTTCCGGTGAAGATGGTGCAACCATTGACTTACTACAATTGTCATCACAGCTTCAGCGAGTTGAGCATGAGAGGCAATCCTTGCAGGTGAAGCAAGAGAATGATTCTTCTTGCACTCTGCGGATTACATAA 1650 0.44 MESWSYVPEEKECVSNEALSPPNTLGRSKNSFLGWELKTPCGFSNDMLGLGHHSIENQGFEELGFPEMLGKHMSDDLIGSVPTRKVNGNRQQQHSDRITGTVVDAPSGFSQRGDSNSKLSNSNSLIDLKLGRFADHGDFTDRAFSKVLSSSESSTPPKRVRASGLHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTAIVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHPGKSGRLLQPCGDSRFQGSMLTSSFICPEMLPSGVTCSEKYGMSDFWRPIKAEHGTGFRNLSSMAATNGHPPSRSLFPSYNGNQFPFLHENSATSTTGSIFCESNSPYPSALGAQNSGLRPLFQDTVGNENFNVFDTSSTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPLAHSLVIPSSHSHNYNMSQVSEKIGISSQTSSSRVSDSFPSELNHADGSHLSPVLISDNNCIVNFDMADGIFQASDYLNVKDHLSGEDGATIDLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00182 549 SUPERFAMILY SBT domain 170 249 IPR036893 GO:0003677|GO:0005634
Gma05g00182 549 MobiDBLite consensus disorder prediction 1 20 - -
Gma05g00182 549 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Gma05g00182 549 PANTHER 1 PROTEIN, PUTATIVE-RELATED 42 549 - -
Gma05g00182 549 MobiDBLite consensus disorder prediction 236 255 - -
Gma05g00182 549 Gene3D - 163 233 IPR036893 GO:0003677|GO:0005634
Gma05g00182 549 Pfam SBP domain 172 245 IPR004333 GO:0003677
Gma05g00182 549 Coils Coil 517 537 - -
Gma05g00182 549 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 549 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00182 Gma-Chr5 1726805 1731558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00182 126 286 SBP-box Gene Family AT1G69170 57.764 4.75e-55 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma05g00182 SBP 4.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00182 - - gmx:100817547 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00182 05 1726805 1731558 Gma17g00760 17 6400038 6404348 ECH
Gma05g00182 05 1726805 1731558 Gma05g00182 05 1726805 1731558 ECH
Gma17g00760 17 6400038 6404348 Gma05g00182 05 1726805 1731558 GST