Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00180 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACGTTCTCAAAGAGAAGGTCTGGTTTGCTGAAGAAAGCGCGCGAGATCTCTGTGCTGTGCGATGCTGATGTGGCTCTCATCGTCTTCTCCACCAAAGGCAAGCTTTTGGACTACTCCAACCAACCTTGTACGGAAAGAATTCTTGAACGGTATGAGAGGTATTCGTATGCGGAGAGGCAACTTGTTGGAGATGATCAACCACCAAATGAAAACTGGGTTATAGAACATGAAAAGCTCAAGGCTAGGGTGGAGGTACTACAGAGAAATCAAAGGAATTTTATGGGAGAAGATCTGGACAGCTTAAATCTTAGAGGACTTCAGAGTTTGGAGCAACAACTTGATTCCGCTCTCAAACACATTAGATCACGAAAGAACCAAGCCATGAATGAATCTATTTCTGAGCTTCAGAAAAAGGATAGGACACTCCGTGAACACAACAACTTGCTCTCCAAGAAGATAAAGGAAAAAGAGAAGGAGCTGACCCCACAAGAGCAAGAAGGACTGCAAAATAACATGGATGTGAGCTCTGTCCTTGTAACTCAACCACTGGAGTCCCTGACTATTGGAGGCTCCCCAGAAGTCAAATCTAATGAAGAAACTCCAACCTCATGTCGACCTAAAACCATTCTTCCCCCTTTGATGCCTCTTCCTACAAATGAATAG 720 0.4458 MGRGRVELKRIENKINRQVTFSKRRSGLLKKAREISVLCDADVALIVFSTKGKLLDYSNQPCTERILERYERYSYAERQLVGDDQPPNENWVIEHEKLKARVEVLQRNQRNFMGEDLDSLNLRGLQSLEQQLDSALKHIRSRKNQAMNESISELQKKDRTLREHNNLLSKKIKEKEKELTPQEQEGLQNNMDVSSVLVTQPLESLTIGGSPEVKSNEETPTSCRPKTILPPLMPLPTNE 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00180 239 MobiDBLite consensus disorder prediction 204 239 - -
Gma05g00180 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 207 - -
Gma05g00180 239 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Gma05g00180 239 Coils Coil 88 108 - -
Gma05g00180 239 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 207 - -
Gma05g00180 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma05g00180 239 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Gma05g00180 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma05g00180 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma05g00180 239 MobiDBLite consensus disorder prediction 204 223 - -
Gma05g00180 239 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma05g00180 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Gma05g00180 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma05g00180 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma05g00180 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma05g00180 239 Coils Coil 125 145 - -
Gma05g00180 239 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma05g00180 239 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00180 Gma-Chr5 1676184 1686141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00180 1 203 MADS-box Gene Family AT1G26310 60.976 2.21e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma05g00180 K-box 2.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00180 K09264 K09260 gmx:100798351 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00180 05 1676184 1686141 Gma17g00766 17 6450692 6459495 ECH
Gma05g00180 05 1676184 1686141 Gma05g00180 05 1676184 1686141 ECH
Gma17g00766 17 6450692 6459495 Gma05g00180 05 1676184 1686141 GST
Gma05g00180 05 1676184 1686141 Gma04g01535 04 41468899 41478604 PCT
Gma04g01535 04 41468899 41478604 Gma05g00180 05 1676184 1686141 PCT