Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00172 ATGCAGGAAATACACACCATGGGCGGAGGGAGGTTTTTCTCCGGCGACCGGAGGCTCCGACCCCACCATCAGAGCCAGCAGGCCCTGAAGTGCCCTCGCTGCGACTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCACAGCCCCGTCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGTTGCCGCAAATCCAAACGCTCCTCCAAACCCACCAAAACATCCTCCCAAACCGCGTCACCGGACCCCGACCACCACAACAACAACACCAACTCTCACTCCAGCAGCGGGAGCTCCAGCCTCACCGCCGCGGCCGCCACCGCCACCACCACCACCACCACCGAGGCCGTGTCGGCGCCGGAGACTCTAAACTTGGATTCCAACAACAACAACAACAACATGCAAGAGTCAAAGTTGTTGATCCCTGCTTTGGAAACAAATCCTCTGGAGCACGGAACAGGGGACTGCGGTGGTATCTTCTCTGAAATCGGTCCTTTCACCAGTTTGATCACTACTACTACTTCCACTAACGAGCCATTGGCGTTCGGGTTCGGTAACTCCACTCTCCCCGATGCGTCGTCGTTTCAGTGGCTCCACCAGAAAGTTAGCAGCAGCAGCAACGAAGAGTTGAAGTTACCCGAGAGTTCCTTGCTCGATCACACCGTTGATTTTCATAGTAAAATCAGCCACGGGGGAGGATTCGGATCGTTGGATTGGCAGGGCGGTGCAGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTACTCTCTTTCATCTTCCCTGA 879 0.5552 MQEIHTMGGGRFFSGDRRLRPHHQSQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPTKTSSQTASPDPDHHNNNTNSHSSSGSSSLTAAAATATTTTTTEAVSAPETLNLDSNNNNNNMQESKLLIPALETNPLEHGTGDCGGIFSEIGPFTSLITTTTSTNEPLAFGFGNSTLPDASSFQWLHQKVSSSSNEELKLPESSLLDHTVDFHSKISHGGGFGSLDWQGGADQGLFDLPNTVDHAYWSHTHWSDHDNSTLFHLP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00172 292 MobiDBLite consensus disorder prediction 73 150 - -
Gma05g00172 292 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
Gma05g00172 292 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Gma05g00172 292 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Gma05g00172 292 MobiDBLite consensus disorder prediction 87 150 - -
Gma05g00172 292 PANTHER DOF ZINC FINGER PROTEIN 4 16 279 - -
Gma05g00172 292 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 279 IPR045174 GO:0003700|GO:0006355
Gma05g00172 292 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00172 Gma-Chr5 1638277 1639434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00172 16 292 C2C2-Dof Transcription Factor Family AT5G60850 43.056 1.63e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma05g00172 zf-Dof 2.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00172 - - gmx:100800458 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00172 05 1638277 1639434 Gma05g00172 05 1638277 1639434 ECH
Gma17g00772 17 6486352 6487567 Gma05g00172 05 1638277 1639434 GST
Gma05g00172 05 1638277 1639434 Gma04g01525 04 41187381 41189095 PCT
Gma04g01525 04 41187381 41189095 Gma05g00172 05 1638277 1639434 PCT