Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00169 ATGGAGCTTCCTCAAGCACGCCCCCTTGGAACCGAAGCAGGGAGGAAACCGACCCATGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGGCCACCTTCTCAAGGAAGTTACCTCAAGACCCATGATTTCTTGCAGCCACTAGAACGGGTAGAAACGAAAGCCAGTGCGAAGGAAGAAGCCACAGATGAAATATCATCGGTGGTTCAAAAGCCACGTTCACCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTATAGTATTAGCCACATTTCATATGTTAATAATAATAATAATAATAATCAAAGGGTTCCAAAACCAGAGACATCATCCCTTTACGGGCGTCAAGCAACTAGTACGGATAGGAATGAAGAAAACTCTAACTGCAGTTCATATACTTCAAGTGGTTTCACTTTGTGGGAAGAGTCGTCGGGGAAGAGGGGAAAGACAGGAAAGGAGAATAATGCGGGCGAGAAACCCTCTCTAGGAGAGTCTGCAGCAAAGCTAGGGCAGTGGACAACAACGGAGCGGACGTCACAGTCGTTTTCCAACAATCGTCACGGCAGCTTCAGCTCTCGCTCTTCGTCTCAGACAACTGGGCTGAAAAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAGGGATAGTGCACAGAATGAAGTGCTAGAAAGCGAGGAAACATTTTTTCTCAAGAAAGAACCCTCCTCGAACACCCAAAGAGCAGAACTGCTTGTGAAAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCAAGATCAAAACACTCTGCAACAGAACAGCGGAGAAGGAGCAAAATTAATGACAGGCAACTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTGGAGGTCATTGAATATATTCATTTTTTGCAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCCAGAAAGATTGATGCCATGGAGAAATAATGACAAGCCAGCAGAAAGTTTTCAACCTCGTGGCACCGATAATGGGTCAAGTCCATCACCAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGCACAGCAACTACCTCCAAGACAATGGATCATCAGGCTGGAAAAATGAACAAGGCTTTTCCAATTCCTATTCCTTCACAGCTAAATTTCTTCACTCCAACCCAAATCGGTGGTCCAGGTGGAGTAGTGTCTCAGCTCACACATAGATCGGCATCTGATGCTGAGAACACCAAATATCAACCTTCAGTGGAATGTCAGACTATGACTGCTACCAATGAAAAGCTGAAAGAGAAAGAGCTCACTATTGAAGGTGGTGCCATTAGCATATCAAGCGTGTACTCAAAAGGGTTGTTACATACGCTTACACACGCATTGCAGAGTTCAGGGGTGGACTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATCAGATCAAATGTACCAGTGTCAGTGTGTGGTGCTAAGGATGGTGCAGTTCCTTCTAACAATCAAAAGATGATGCGCTCTAGAGTTGCTAGCTCTGGGAAGTCTGACCAAGCAGTTAAGAAGCTAAAGACTTGCAGAAGTTAA 1635 0.4459 MELPQARPLGTEAGRKPTHDFLSLYSNSTAQQDPRPPSQGSYLKTHDFLQPLERVETKASAKEEATDEISSVVQKPRSPSVEHLLPGGIGTYSISHISYVNNNNNNNQRVPKPETSSLYGRQATSTDRNEENSNCSSYTSSGFTLWEESSGKRGKTGKENNAGEKPSLGESAAKLGQWTTTERTSQSFSNNRHGSFSSRSSSQTTGLKNQSFIEMMKSARDSAQNEVLESEETFFLKKEPSSNTQRAELLVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRQLIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEPERLMPWRNNDKPAESFQPRGTDNGSSPSPTIPGSTQNVESGLSTATTSKTMDHQAGKMNKAFPIPIPSQLNFFTPTQIGGPGGVVSQLTHRSASDAENTKYQPSVECQTMTATNEKLKEKELTIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRSNVPVSVCGAKDGAVPSNNQKMMRSRVASSGKSDQAVKKLKTCRS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00169 544 MobiDBLite consensus disorder prediction 252 292 - -
Gma05g00169 544 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 330 IPR036638 GO:0046983
Gma05g00169 544 MobiDBLite consensus disorder prediction 21 45 - -
Gma05g00169 544 MobiDBLite consensus disorder prediction 1 84 - -
Gma05g00169 544 MobiDBLite consensus disorder prediction 173 207 - -
Gma05g00169 544 MobiDBLite consensus disorder prediction 517 535 - -
Gma05g00169 544 MobiDBLite consensus disorder prediction 246 292 - -
Gma05g00169 544 MobiDBLite consensus disorder prediction 103 207 - -
Gma05g00169 544 MobiDBLite consensus disorder prediction 328 375 - -
Gma05g00169 544 MobiDBLite consensus disorder prediction 513 544 - -
Gma05g00169 544 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 541 IPR044295 GO:0003700|GO:0006351|GO:0046983
Gma05g00169 544 PANTHER TRANSCRIPTION FACTOR BIM1 1 541 - -
Gma05g00169 544 SMART finulus 270 315 IPR011598 GO:0046983
Gma05g00169 544 MobiDBLite consensus disorder prediction 49 70 - -
Gma05g00169 544 Gene3D - 262 329 IPR036638 GO:0046983
Gma05g00169 544 Coils Coil 213 233 - -
Gma05g00169 544 MobiDBLite consensus disorder prediction 103 147 - -
Gma05g00169 544 Pfam Helix-loop-helix DNA-binding domain 266 310 IPR011598 GO:0046983
Gma05g00169 544 MobiDBLite consensus disorder prediction 341 375 - -
Gma05g00169 544 CDD bHLH_AtBIM_like 263 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00169 Gma-Chr5 1594432 1602305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00169 1 496 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 48.846 8.64e-124 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma05g00169 HLH 5.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00169 - - gmx:100800999 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00169 05 1594432 1602305 Gma05g00169 05 1594432 1602305 ECH
Gma17g00775 17 6524581 6534933 Gma05g00169 05 1594432 1602305 GST