Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00167 ATGTCGTCGTTGGGTTCCCCGAAGAAGCGGCTGAGATCCCAAACAGCAGAAGAGAATAAGGAAGAGGTCGTTTGTTGCGGGATTTGCTACGCTGAGCGTGGGGTTTCGATTACAGGGGAAATCGATTGCTGCAGCCACCACTTCTGCTTCGTTTATCATCCTCATGGAAATATGGCAACTGGTCCGGCTGATTCTTATACTGAAACCAAATGTGGTGTTTGTCATGCTGGAACAGATGAGCATCTTCTACTACTTTGTGATCTATGTGATACTGCTTCGCACACATACTGTGTTGGCCTGGGCTATACTGTTTCTGATGGTGATTGGTTTTGTCACGATTCTGAGCCAAGTGTAACCATCAATATCTTTGATATTGTGAGGGAAACAGGCAGCCGGGTGGTTAATAGACCAAGGGCATCTCCTTTACAACAGAACCTGTCATCTCCTGTTATTCCTTTACCTGATAGGTTAAGTTACTTAAGTAGATTAAAAGGAAAAGGTCCTGTCACAGGTGTCTGTAATATGCAGCGGAATGTAAAGGTTTTTCGTGAAAATTGGAATGCTTTGAGAAGTGGTTCATTTCAGTTCCGTTGCAATTCATTTCAACCTGGAAGCACAGTTAGTCAAAAACAAGATTCTAGTTCCTTATCACATCACAAATTGGATGGTTTGCATTCTATGGCTTCCACGAGCCTTCAACAATCCACTGTCCAAGGTGGTCCTTCTAACAAAATGTTGAATGAGAGAGTCTTTAAAGATGCTGACAAGGCATGGAAAATGATGGACAGGGCAAAGAGGATACAACGCCTCATCATAGAACAGGCAGCATTCTACAGGGAGAACACTAAAATGGAGAAGCAGTGTGACTATTCTAGTCTCAACCAGAATTTGGAAAATCGCTCTACTCTAAATTTGGAAGAGAAAAAGCAAAGTAGGGTTACATGTGTTGATACCTTCAAGGTAGTTGCAAGGCAGGCCACTCATACCATCTTGGCTACTTGCAGTTCTGATCAGCAAAAGTCTAGTACATCCTCCTCTAGCTCAGTATGCAGCCATGCCGACAATACTCCTCAGTTTCAGAAATCTACTTTAATGCCTAATTGTTGCAGGCAATGCTTTTATGACTTTGTAAACAATGTTGTCAACTCTACCATATTGGAGAAAGTGGGTTGCGCTTGA 1179 0.4275 MSSLGSPKKRLRSQTAEENKEEVVCCGICYAERGVSITGEIDCCSHHFCFVYHPHGNMATGPADSYTETKCGVCHAGTDEHLLLLCDLCDTASHTYCVGLGYTVSDGDWFCHDSEPSVTINIFDIVRETGSRVVNRPRASPLQQNLSSPVIPLPDRLSYLSRLKGKGPVTGVCNMQRNVKVFRENWNALRSGSFQFRCNSFQPGSTVSQKQDSSSLSHHKLDGLHSMASTSLQQSTVQGGPSNKMLNERVFKDADKAWKMMDRAKRIQRLIIEQAAFYRENTKMEKQCDYSSLNQNLENRSTLNLEEKKQSRVTCVDTFKVVARQATHTILATCSSDQQKSSTSSSSSVCSHADNTPQFQKSTLMPNCCRQCFYDFVNNVVNSTILEKVGCA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00167 392 Pfam PHD-finger 71 112 IPR019787 -
Gma05g00167 392 PANTHER HISTONE ACETYLTRANSFERASE 135 279 - -
Gma05g00167 392 PANTHER HISTONE ACETYLTRANSFERASE 8 51 - -
Gma05g00167 392 PANTHER HISTONE ACETYLTRANSFERASE 51 114 - -
Gma05g00167 392 PANTHER HISTONE ACETYLTRANSFERASE 302 392 - -
Gma05g00167 392 SMART PHD_3 70 115 IPR001965 -
Gma05g00167 392 PANTHER PHD-FINGER FAMILY PROTEIN 302 392 - -
Gma05g00167 392 PANTHER PHD-FINGER FAMILY PROTEIN 51 114 - -
Gma05g00167 392 PANTHER PHD-FINGER FAMILY PROTEIN 8 51 - -
Gma05g00167 392 PANTHER PHD-FINGER FAMILY PROTEIN 135 279 - -
Gma05g00167 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 122 IPR013083 -
Gma05g00167 392 SUPERFAMILY FYVE/PHD zinc finger 64 113 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00167 Gma-Chr5 1574391 1578780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00167 62 111 C2H2 Transcription Factor Family AT3G01460 39.216 2.60e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma05g00167 PHD 6.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00167 - - gmx:100808541 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00167 05 1574391 1578780 Gma05g00167 05 1574391 1578780 ECH
Gma17g00776 17 6545097 6549407 Gma05g00167 05 1574391 1578780 GST