Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00165 ATGGCAGATGTAACCACCTACCTCCGCCACCACCGCGACCCCGACCCCGACCCCGACGACGACGACCAAACCCTAATTCCATTCCCTTATTGGGATTTGGACTTTGATTTCGACCCCGAATTCCCCACAAACACTTTCTCCTTCACCGACCGCGAAAACCAGATCAATTTCGTCATGGATCTCTTCCACCAGCGCGTGGAGCAGTCTCAACTCACCGATCCCCTCTCCAACGACGCCGTTTTCGGCGTCATCGACGGAATCGACTTAGGTTTCCCCGCCGCCGACGACTTCTTCATCGGACGGAGATTCTCCGTCGGATCCGACGAATCCGACGGAGGACACTCTCACTCGCACGCGGGGATTGACGACGGTGTCCTGGGGTTCTGCGCGCATTCCGACGAAGACTACAACGAAAACGACGACGTTGCGAGCATCCCTCTCTGCTGGGACGCGCTTCAATTGGAAGACAACAACAACAACTACGATGACTTCGAGTGGGAGGAAGTGATAGACGAGAGAGACGTTCTCAGCATGCTCGACGACACCGTTTCCGTTAACCTCGGAATCgaagcagaagcagcagcagcagcagcagaagaagaagaagcagaatcagaagcCAGCATTTTGGAGTGGCAAGTTTTATTGAACTCCAACAATTTGGAAGGACCAAATTCGGAGCCTTATTTCGGAGACAACGAGGATTTCGTTTACACCGCGGACTACGAGATGATGCTCGGGCAATTCAACGACGATGCGTTTAATGGGAAGCCTCCGGCCTCCGCCTCCGTCGTGAGGAATCTTCCGTCGGTGGTTGTGACCGAAGCTGACGTCGTTTGCGCGGTTTGTAAAGACGAGTTTGGCGTTGGGGAAGGGGTGAAGGTGTTGCCGTGTTCGCATCGTTACCATGAGGACTGCATTGTGCCGTGGTTGGGGATAAGAAACACGTGTCCCGTTTGTCGCTATGAGTTCCCCACTGATGATGCTGATTATGAGCGGAGGAAGGCGCAGAGATCTGTTGTTATGTGA 1029 0.5131 MADVTTYLRHHRDPDPDPDDDDQTLIPFPYWDLDFDFDPEFPTNTFSFTDRENQINFVMDLFHQRVEQSQLTDPLSNDAVFGVIDGIDLGFPAADDFFIGRRFSVGSDESDGGHSHSHAGIDDGVLGFCAHSDEDYNENDDVASIPLCWDALQLEDNNNNYDDFEWEEVIDERDVLSMLDDTVSVNLGIEAEAAAAAAEEEEAESEASILEWQVLLNSNNLEGPNSEPYFGDNEDFVYTADYEMMLGQFNDDAFNGKPPASASVVRNLPSVVVTEADVVCAVCKDEFGVGEGVKVLPCSHRYHEDCIVPWLGIRNTCPVCRYEFPTDDADYERRKAQRSVVM 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00165 342 PANTHER - 15 77 - -
Gma05g00165 342 PANTHER - 94 340 - -
Gma05g00165 342 SUPERFAMILY RING/U-box 274 327 - -
Gma05g00165 342 ProSiteProfiles Zinc finger RING-type profile. 280 321 IPR001841 -
Gma05g00165 342 Coils Coil 186 206 - -
Gma05g00165 342 MobiDBLite consensus disorder prediction 1 22 - -
Gma05g00165 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 327 IPR013083 -
Gma05g00165 342 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 15 77 - -
Gma05g00165 342 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 94 340 - -
Gma05g00165 342 SMART ring_2 280 320 IPR001841 -
Gma05g00165 342 MobiDBLite consensus disorder prediction 1 18 - -
Gma05g00165 342 Pfam Ring finger domain 280 321 IPR001841 -
Gma05g00165 342 CDD RING-H2_RNF126_like 280 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00165 Gma-Chr5 1565129 1566592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00165 143 327 C3H Transcription Factor Family AT5G60820 47.196 5.22e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00165 - - gmx:100794303 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00165 05 1565129 1566592 Gma05g00165 05 1565129 1566592 ECH
Gma17g00778 17 6561276 6562724 Gma05g00165 05 1565129 1566592 GST