Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00159 ATGGGGTGCTCATTCTCCGGGTTGAACGCACTTTACGACTCCGTGAACGGCGGAGGTGATGTTTGGATCAACGAGAACCGTTTCCGCATCGTGCGCCAGCTCGGAGAAGGTGGCTTCGCCTACGTCTACCTCGTCAAGGAGGCTCCCGACGACTCCGCCGCCGCTGGCCTCGCCAAGAAGCTCAAAGGCTCCTCTCATCTCTCCGATGATGGAACTTATGCTATGAAAAAGGTCCTCATTCAGAACAATGAACAGCTGGAGTTGGTCAGGGAGGAGATCCGTGTTTCATCACTGTTCAATCATCCCAATCTGCTCCCGCTTCTTGAGCATGCAATCATTTCTGTCAAGCCTACCCATGAAACATCTTGGAACCATGAAGCATATTTATTGTTTCCAGTTCATTTGGATGGAACATTGCTAGACAATGCCAAAATAATGAAAGCCAAGAAAGAATTCTATTCCACCTCAGATGTGCTTCAAATATTTCGTCAGCTTTGTGCAGGACTCAAGCACATGCACAGTTTTGATCCTCCTTATGCACATAATGATGTCAAACCTGGTAATGTTCTCATAACACACAGAAAAGGACAACCACCTCTTGCCATACTGATGGATTTTGGCAGTGCTCGTCCTGCAAGGAAGCAAATTAGCTCCAGGTCAGAGGCCCTTCAGTTGCAGGAATGGGCATCTGAACATTGCTCTGCTCCTTTCCGAGCTCCTGAGCTGTGGGATTGCCCAAGCCAAGCTGATATAGATGAGAGGACTGACATTTGGTCGCTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCACTTGGAGAGTCTGGTGGAAGCCTGCAATTGGCTATTGTAAATGCACAGGTCAAATGGCCAGCAGGACCCAAGCCTCCATATCCAGAAGCTCTTCATCAGTTCGTGTCATGGATGCTTCAGCCAACGGCTTCCATGCGGCCCAGGATAGATGATATCATTATCCATGTTGACAAGTTAGTTGCGAAGTTCTCTCAATGA 1029 0.4772 MGCSFSGLNALYDSVNGGGDVWINENRFRIVRQLGEGGFAYVYLVKEAPDDSAAAGLAKKLKGSSHLSDDGTYAMKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLEHAIISVKPTHETSWNHEAYLLFPVHLDGTLLDNAKIMKAKKEFYSTSDVLQIFRQLCAGLKHMHSFDPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKQISSRSEALQLQEWASEHCSAPFRAPELWDCPSQADIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQVKWPAGPKPPYPEALHQFVSWMLQPTASMRPRIDDIIIHVDKLVAKFSQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00159 342 Gene3D Transferase(Phosphotransferase) domain 1 15 341 - -
Gma05g00159 342 SUPERFAMILY Protein kinase-like (PK-like) 20 332 IPR011009 -
Gma05g00159 342 PANTHER - 1 341 - -
Gma05g00159 342 SMART serkin_6 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00159 342 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 341 - -
Gma05g00159 342 CDD STKc_16 27 336 - -
Gma05g00159 342 ProSiteProfiles Protein kinase domain profile. 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00159 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Gma05g00159 342 ProSitePatterns Protein kinases ATP-binding region signature. 34 60 IPR017441 GO:0005524
Gma05g00159 342 Pfam Protein kinase domain 31 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00159 Gma-Chr5 1526391 1531212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00159 33 332 EF-hand Containing Proteins AT4G04710 25.246 9.94e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Gma05g00159 Pkinase 1.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00159 K08856 - gmx:100803659 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00159 05 1526391 1531212 Gma05g00159 05 1526391 1531212 ECH
Gma17g00782 17 6589639 6594185 Gma05g00159 05 1526391 1531212 GST