Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00144 ATGGAGCCCATGGACATTGTTGGCAAGTCAAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACAAAAATTATTAAAGAGATGTTACCCCCAGATGTACGTGTTGCAAGAGATGCCCAAGATCTATTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTCTCGTCAGAATCCAATGAAGTTTGTAACAGAGAGGATAAACGGACAATTGCACCTGAGCATGTATTGAAGGCTCTACAGGTTCTTGGATTTGGTGAGTATGTTGAAGAAGTTTATGCAGCATATGAACAGCACAAGCTGGAGACCATGCAGGACTCTTTAAGGGGTGGTGGTAAATGGAGCAATGGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCGCGTGCTAGGATGAACGGTGGAGCCATTGCTTCCAAGCAGCCAGATGCTGACCAAAGTTTAGATAGCTAA 474 0.443 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKLETMQDSLRGGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGAIASKQPDADQSLDS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00144 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Gma05g00144 157 MobiDBLite consensus disorder prediction 138 157 - -
Gma05g00144 157 SUPERFAMILY Histone-fold 12 144 IPR009072 GO:0046982
Gma05g00144 157 PANTHER PROTEIN DR1 HOMOLOG 1 156 IPR044255 -
Gma05g00144 157 Gene3D Histone, subunit A 4 144 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00144 Gma-Chr5 1408639 1413056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00144 1 153 CCAAT-DR1 Transcription Factor Family AT5G23090 84.516 5.55e-94 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma05g00144 CBFD_NFYB_HMF 3.9e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00144 K21751 - gmx:100807912 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00144 05 1408639 1413056 Gma05g00144 05 1408639 1413056 ECH
Gma17g01154 17 10037385 10041746 Gma05g00144 05 1408639 1413056 GST