Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00125 ATGAGCTGGCGCAGGGTATTGAATTCAGCACAGGCCTTGGCTGCACACACTTTCCTTTTGTGCTTCACTCTCTTCCTCGTTCTCAAGCTCGATCACAATCTCTCTTCTTCTTGGTGGGTAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAATTGGGCTCCATGCCATGCCGTTGTTGCAACACCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGATCGTGGCTATGCTGCAGTTGGTCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGATGTGTAAGGCTCTAATGCCAGGGGATGGAGAAAACATGAGTGATGAGGCTATATGGGAAACTCTTCCTCATTTTTGGGTTGCTATCTCTATGGTGTTCTTCGTTGCTGCTACAGTCTTCACACTCCTAAAGCTTAGTGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTGTTTATTAATTTTATTATTGCCGAGTGCTTTGCTTTCCTTGTATGTACAAAGTGGTCCAATCCCGTCATTCATAGAAATTCAAGAGAAGCTAGTAGTTCATCTTCAACTACGATTGGATATCTTGACTGGAACAGTGGTTTAGTGGTTTCTACAGACGAAAATCAACCCCAGGGGAGAATCTGTAGCCTTCAAGACATAGGAGGTCATTTCATGAAAATACCAATTATTGTATTCCAGGTTCTTCTTTGTATGCATCTAGAGGGAACACCTGCTTGTGCTGTATATATACCGCTTCCAGTTATTTTCTCTCCCCTTTTCCTACTGCAAGGAGCTGGTGTACTGTTATCTGCATCTAAATTAGGGGAGAAGCTTGTGCTTCTGCTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGATTTTCTTCAAGAGCTCATGATTGCTTGGGGTTCTTGTGCCATGGTTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACATGCACGACTATACCATGAGGGAGCAATTGGGTATAATACATTTAGTGGTTATCCTCCTGAGATCGTTAAGAAAATGCCAAAAAAAGAACTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAAACAGAAATTACAAAATTCAGCCAACAGGAGTATGAAAGACTTCAAAATGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTAACGTTGTATTGCTCCCATGTAGGCATCGTGTCCTTTGCAGCACTTGCTCACAGAAGCGTAAGAAGTGCCCTATTTGCCGTGATTCTATTGCTGAGCATGGGTTCGTGCCAGGAACTGTTTCTTCGTTCCTAACTCCTATATTCAGTGTTCCGGAGAAAGCTTTCAAGTGTTATAGTTGTTAA 1464 0.4228 MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHNLSSSWWVIFLPLWMFHGVVARGRFSLPAPSAPRNRNWAPCHAVVATPLLIAFELLLCIYLESLYDRGYAAVGLKIVFLPLLTFEIIILIDNFRMCKALMPGDGENMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGDVGALGWWDLFINFIIAECFAFLVCTKWSNPVIHRNSREASSSSSTTIGYLDWNSGLVVSTDENQPQGRICSLQDIGGHFMKIPIIVFQVLLCMHLEGTPACAVYIPLPVIFSPLFLLQGAGVLLSASKLGEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLCHGSRLLGWWSIDEGSREEHARLYHEGAIGYNTFSGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLCRICFEGEINVVLLPCRHRVLCSTCSQKRKKCPICRDSIAEHGFVPGTVSSFLTPIFSVPEKAFKCYSC 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00125 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 461 IPR013083 -
Gma05g00125 487 Pfam Zinc finger, C3HC4 type (RING finger) 416 458 - -
Gma05g00125 487 Pfam Transmembrane Fragile-X-F protein 28 291 IPR019396 -
Gma05g00125 487 ProSiteProfiles Zinc finger RING-type profile. 419 454 IPR001841 -
Gma05g00125 487 SUPERFAMILY RING/U-box 410 459 - -
Gma05g00125 487 SMART ring_2 419 453 IPR001841 -
Gma05g00125 487 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 460 - -
Gma05g00125 487 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00125 Gma-Chr5 1244540 1254510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00125 1 460 C3H Transcription Factor Family AT1G73950 71.957 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00125 - - gmx:100791390 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00125 05 1244540 1254510 Gma17g01136 17 9844733 9853111 ECH
Gma05g00125 05 1244540 1254510 Gma05g00125 05 1244540 1254510 ECH
Gma17g01136 17 9844733 9853111 Gma05g00125 05 1244540 1254510 GST