Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00108 ATGTTCATGCACACTGTCCGGATATCTAAGCACAAACAAGCAAGCTTCAAATTTTGTTTTGACTCCTTGCTTGATGCTACTCCTTGTGTTGTGTTGTGTTGTGTGGTGTGTTTTTATTATTATGCCCATAAACACGGAAGACTGAACTACTTGACAAGTGCAATGAAGGATCCAGTGGAGGATCAAGTGAAATCTAGGAGTGCACTGCAGAAACCCAAAGACCATAGAAGAAGAGATAGAAGAAGAAGAAGCCAATGCAAACAAGAGAAATTACAAGAAACAGGACTTGACACACAATTGGTTTCCTCTGCTTGCAAAAGTCTTGTGTTTCCTGCAAGGCCTGGCTATGGCCAGCTGGGGACAAAGTGTCTGGTCAAAGCCAACCACTTCCTGGCAGATATATCAGCATCTGATTTGAGCCATTACAATGTTAAAATAACACCTGAGGTTACTTCTCGTAAGACAAGCAAAGCCATCATAGCTGAGTTAGTGAGGCTTCACAGGAACACTGACTTGGGGATGAGGCTTCCTGTTTATGATGGAGGAAGAAATCTCTACACTGCTGGCTTGCTTCCTTTTGCATTCAAAGAGTTCACCATACTACTGAGCAAGGATGATGAGGGCACTGGTTCTACCAGGGAAAAAGAATTTGAAGTGGTGATCAAGTTTGCAGCTCGTGTTAGCATGCATCAATTACGTGAGCTTCTGAGTGGGAAACAAGTGGACACCCCACAAGAGGCGCTTACTGTCATTGACATTGTATTGAGGGAGCTTGCGACTCAGAGCTACGTGTCAATTGGGAGGTTTCTCTATTCTCCGAATTTAAGAAAACCACAGCAGCTAGGTGGTGGCCTGGAATCATGGCGCGGCTTCTACCAGAGTATAAGGCCAACTCAGATGGGATTGTCACTTAATATTGACATGTCATCAATGGCGTTTATTGAACCACTTCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTTCTCTCAAAGCCATTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTAAGAGGTGTGAAAGTAGAAGTTACACATAGAGGAAGTTTTCGAAGGAAGTACAGGATTACAGGATTGACATCACAGCCTACAAGGGAGCTTAGTTTCCCCGTCGATGAGAAAATGAACATGAAATCAGTAGTTGATTACTTTCAAGAAATGTATGGATATACAATCATATATTCTCATCTACCCTGCCTTCAAGTAGGAAGCCAAAAGAAGGTGAACTATTTGCCTATGGAGGCATGTAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGCTAAAGGTCTCATGCCAGAGACCACGTGAACAAGAGACAGATATTCTCCAGCAGACAATTCACGAAACTGATTATGAGTATAATCCCTATGCAAAGGAGTTTGGGATCAGCATTGACAGCAAGCTTGCATCAGTTGAGGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCACGAGACTGGAAGGGAGAAAGAATACTTGCCACAAGTTGGTCAATGGAACATGATGAACAAGAAAGTTATAAACGGAAGCACTGTAAGATATTGGGCATGCATTAATTTCTCCCGAAGTATCCAAGAAAGTATTGCTCGCGGGTTTTGCCAACAGTTAGTTCAAATGTGCCAAATCTCAGGCATGGAATTTAGTCTAGACCCTGTGATTCCTATATATTCAGCAAGACCTGATCTGGTAAAGAAAGCCTTGAAGTACGTACATTCTGCTGTACTTGATAAACTTAGTGGGAAAGAACTAGAGTTGCTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGGTGATCTCAAAAGAATCTGTGAAACAGATCTGGGGTTGATTTCTCAGTGCTGTCTTACAAAACACGTATTCAAGATCAATAGACAGTATTTGGCAAATGTGGCGCTGAAGATCAATGTTAAGATGGGAGGAAGGAACACAGTACTTTTGGATGCGCTAAGTTGGAGAATCCCATTGGTTAGTGACATTCCAACAATAATTTTTGGAGCAGATGTAACTCATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCAGAAGTGACAAAATATGCAGGATTGGTATGTGCTCAGCCTCATCGCGAGGAACTCATTCAAGACCTTTTTAAATGTTGGAAGAATCCTCATCACGGTATAGTTTATGGTGGCATGATCAGAGAGCTGTTACTCTCTTTTAAGAAGGCAACTGGACAAAAACCATTGAGGATAATATTTTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGTTGCATGAGCTTGATGCCATCCGTAAGGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCTGTAACATTTGTTGTGGTTCAAAAGCGGCATCACACTAGACTCTTCTCAAACAATCATGACGACAGAAATAGCACTGATAAGAGTGGGAATATCTTACCTGGTACTGTGGTGGATTCTAAGATCTGTCATCCTACGGAATTCGACTTCTATTTATGTAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCTCATTATCATGTTCTGTGGGACGAGAACAATTTCACTGCTGATGAGATCCAATCTCTGACCAACAACTTGTGCTACACCTATGCAAGATGTACACGATCGGTTTCTGTAGTGCCTCCTGCGTACTATGCTCATTTGGCAGCTTACAGAGCTCGATTCTACATGGAACCTAATGTCCATGAAATTGCTAAAGCTCGAGGTGGAAGATCAAAAGATGAGTCAGTTCGGCCACTGCCAGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGTTGA 2892 0.4257 MFMHTVRISKHKQASFKFCFDSLLDATPCVVLCCVVCFYYYAHKHGRLNYLTSAMKDPVEDQVKSRSALQKPKDHRRRDRRRRSQCKQEKLQETGLDTQLVSSACKSLVFPARPGYGQLGTKCLVKANHFLADISASDLSHYNVKITPEVTSRKTSKAIIAELVRLHRNTDLGMRLPVYDGGRNLYTAGLLPFAFKEFTILLSKDDEGTGSTREKEFEVVIKFAARVSMHQLRELLSGKQVDTPQEALTVIDIVLRELATQSYVSIGRFLYSPNLRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVLSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRITGLTSQPTRELSFPVDEKMNMKSVVDYFQEMYGYTIIYSHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQQTIHETDYEYNPYAKEFGISIDSKLASVEARVLPAPWLKYHETGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSIQESIARGFCQQLVQMCQISGMEFSLDPVIPIYSARPDLVKKALKYVHSAVLDKLSGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKNPHHGIVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPNVHEIAKARGGRSKDESVRPLPALKEKVKNVMFYC 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00108 963 Gene3D paz domain 311 435 - -
Gma05g00108 963 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 71 962 - -
Gma05g00108 963 MobiDBLite consensus disorder prediction 62 89 - -
Gma05g00108 963 CDD PAZ_argonaute_like 316 430 - -
Gma05g00108 963 Pfam N-terminal domain of argonaute 122 255 IPR032474 -
Gma05g00108 963 Pfam Argonaute linker 1 domain 265 314 IPR014811 -
Gma05g00108 963 Gene3D - 496 669 - -
Gma05g00108 963 SMART DUF1785_2 264 316 IPR014811 -
Gma05g00108 963 Pfam Argonaute linker 2 domain 460 504 IPR032472 -
Gma05g00108 963 ProSiteProfiles PAZ domain profile. 317 431 IPR003100 GO:0005515
Gma05g00108 963 PANTHER PROTEIN ARGONAUTE 10 71 962 - -
Gma05g00108 963 SUPERFAMILY Ribonuclease H-like 595 927 IPR012337 -
Gma05g00108 963 Pfam PAZ domain 342 447 IPR003100 GO:0005515
Gma05g00108 963 SUPERFAMILY PAZ domain 312 464 IPR036085 GO:0005515
Gma05g00108 963 Pfam Piwi domain 607 926 IPR003165 GO:0003676
Gma05g00108 963 Pfam Mid domain of argonaute 515 592 IPR032473 -
Gma05g00108 963 ProSiteProfiles Piwi domain profile. 606 927 IPR003165 GO:0003676
Gma05g00108 963 CDD Piwi_ago-like 476 926 IPR045246 -
Gma05g00108 963 Gene3D - 675 963 IPR036397 GO:0003676
Gma05g00108 963 MobiDBLite consensus disorder prediction 70 84 - -
Gma05g00108 963 SMART PAZ_2_a_3 321 453 IPR003100 GO:0005515
Gma05g00108 963 SMART Piwi_a_2 606 927 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00108 Gma-Chr5 1008423 1016722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00108 95 963 Eukaryotic Initiation Factors Gene Family AT5G43810 73.432 0.0 1384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00108 K11593 - gmx:100808457 1804.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00108 05 1008423 1016722 Gma05g00108 05 1008423 1016722 ECH