Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00103 ATGAAGGGGGAAGTGCAGCTTCAGCCTCCAGCGGTTATGCAAAACCCTAGTGATTCGGACCCTTTGCTCCATAACCAGGAGGAAGAGGATGGGTCTCCGGGAAGCTCTGGTGAGATCAAGAATGAGGAAGAAGACGTTGAGGCTGGATTACTCCCCTGTTGTCGAATTTGCCTCGAAAGCGATTCCGACCCAGAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGGAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTTAGAGTTGAATCGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTTTGGCTGTACAAACTGTGATTGCAGCTATTGGTGGCTTTTCATACATCATGGACAAAGATGGTTCCTTCAGGAACTCATTTGATGATGGTTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATCGGAGTGCTGGCCTTCTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATTGCTCCTCCCTCAATAGCAATGACCCCAGAATGGCTGGCTGTCAAAACTGTTGTTATGGTTGGGGCATCTTGGATTGCTTTCCTGCGTCAATGGAGGCATGCTTTGCCCTTGTGGTTGTTTTTGTTGTCATCTTTGCAATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATATGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGGAATACATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCCAAGTTGGACCCAGAACATGAAGGTCGCTTGAAAATGCTTAAGCTCTTGTAA 930 0.4538 MKGEVQLQPPAVMQNPSDSDPLLHNQEEEDGSPGSSGEIKNEEEDVEAGLLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFSYIMDKDGSFRNSFDDGWDRILSRHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLGGCYFPPKLDPEHEGRLKMLKLL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00103 309 CDD RING_CH-C4HC3_MARCH 54 105 - -
Gma05g00103 309 Pfam RING-variant domain 54 104 IPR011016 GO:0008270
Gma05g00103 309 SUPERFAMILY RING/U-box 52 109 - -
Gma05g00103 309 MobiDBLite consensus disorder prediction 1 42 - -
Gma05g00103 309 ProSiteProfiles Zinc finger RING-CH-type profile. 46 111 IPR011016 GO:0008270
Gma05g00103 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 117 IPR013083 -
Gma05g00103 309 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 309 - -
Gma05g00103 309 SMART ringv_2 53 105 IPR011016 GO:0008270
Gma05g00103 309 MobiDBLite consensus disorder prediction 22 42 - -
Gma05g00103 309 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00103 Gma-Chr5 959095 963752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00103 1 309 C3H Transcription Factor Family AT1G11020 78.816 9.76e-171 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00103 - - gmx:100818950 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00103 05 959095 963752 Gma05g00103 05 959095 963752 ECH