Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00082 ATGAGTTTCTCTGACCATATTCCATCCTTTATGATGTCACCGCCGTCGTTTTCCACAGACACGGATGCCATTGAAGTGAGGCTTCAATTCCCAACGAACAACGAATCATTGGAGCCACATTCACCACAGGATCAACCCCCTTCGTTCAAGAGGGCAAGGACCTGTGATAGCAGCCTCTCCAATGCAATGGCATGCCCTCCAAGGATGATTCAGCACCCTGCACTTAACAAAGGAACGAGCCACATTTTCTTCAAGACCCGTATTTGTGCAAAGTTCAGAGCTGGCGCTTGTAGGAACGGCGAGAACTGCAATTTTGCACATGGGCTTGAAGACATGAGGCAGCCGCCACCAAATTGGCAAGAGCTTGTTGGGTTGCGCAATGAGGAGCGGCCACCCACGATGGGGGATTGGGACGATGACCAGAAAATCATACACAAGATGAAGCTGTGCAAGAAGTATTACAATGGGGAGGAATGCCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCCAGGTTCAGGGATGATTCGGTGAGGTACAGGGAGAGCACAGCTATAAGCATTGGTACTAATGGATCCCCCAAGTCCTATGGTGATGCCTCTAATAATTTAGAAAGTAATAGGGCTGTGAATACTGGCTTAAATGTTTTCCGGGGGAATGTTAAATCTACCTATTGGAAGACTAAACTCTGCATCAAATTTGAGACAACAGGCCACTGCCCCTTTGGGGATGACTGTCACTTTGCTCATGGGCAAGCAGAGTTACAAGTTCCTGGTGGACGCACCGAGGCAGAAATTCCAGGTGCCATTCCAATTTCAACCAAAGCTACCATTCCAACCTTACCAAGAGCTACATCAGTTTCTTCTAATGATGCACCTCCTAGTCACAGAGCAAGTGTACTTCCAGCAAATGAAGAGGATCAGGATGAGAAGTGTTTACTGAAGTGGAAAGGACACAGGAAGATCAACCGAATTTATGGTGACTGGCTTGACGATTTACCACTCGTTCACGACTTGCCAGTTGCCAGGTAG 1038 0.475 MSFSDHIPSFMMSPPSFSTDTDAIEVRLQFPTNNESLEPHSPQDQPPSFKRARTCDSSLSNAMACPPRMIQHPALNKGTSHIFFKTRICAKFRAGACRNGENCNFAHGLEDMRQPPPNWQELVGLRNEERPPTMGDWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPARFRDDSVRYRESTAISIGTNGSPKSYGDASNNLESNRAVNTGLNVFRGNVKSTYWKTKLCIKFETTGHCPFGDDCHFAHGQAELQVPGGRTEAEIPGAIPISTKATIPTLPRATSVSSNDAPPSHRASVLPANEEDQDEKCLLKWKGHRKINRIYGDWLDDLPLVHDLPVAR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00082 345 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Gma05g00082 345 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 336 - -
Gma05g00082 345 SUPERFAMILY CCCH zinc finger 226 258 IPR036855 GO:0046872
Gma05g00082 345 MobiDBLite consensus disorder prediction 285 306 - -
Gma05g00082 345 MobiDBLite consensus disorder prediction 31 52 - -
Gma05g00082 345 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 336 IPR045877 GO:0003729
Gma05g00082 345 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 254 IPR000571 GO:0046872
Gma05g00082 345 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Gma05g00082 345 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Gma05g00082 345 Gene3D - 141 173 - -
Gma05g00082 345 Gene3D - 221 259 - -
Gma05g00082 345 Gene3D - 77 114 - -
Gma05g00082 345 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Gma05g00082 345 Pfam CCCH-type zinc finger 148 169 IPR041367 -
Gma05g00082 345 ProSiteProfiles Zinc finger C3H1-type profile. 227 255 IPR000571 GO:0046872
Gma05g00082 345 SUPERFAMILY CCCH zinc finger 144 171 IPR036855 GO:0046872
Gma05g00082 345 SMART c3hfinal6 227 254 IPR000571 GO:0046872
Gma05g00082 345 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Gma05g00082 345 SMART c3hfinal6 144 171 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00082 Gma-Chr5 788720 790929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00082 229 258 C3H Transcription Factor Family AT1G68200 60.000 5.29e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma05g00082 zf-CCCH 9.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00082 - - gmx:100780649 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00082 05 788720 790929 Gma05g00082 05 788720 790929 ECH