Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00078 ATGGACCAAGATTCGCTCAAGCGCTACACCGATTGCGTTTATTTCTTAGCCTCTCCCCTCACTTGCAAGAAGGGGGCTGAATGTGAGTATCGGCATAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGCTATCTGGCCAATGCCTTAATCCAACCTGTGCTTTTAGACACCCTCCATTGGATGGGCATACTGGAGCGTCAGTGCCATCTGAACCTACGCAAACTTCATTACCTGCAAACAAGACAATGGTTCCCTGTTATTTTTTCTTCAATGGATCTTGCAACAAAGGTGACAGATGCTCATTTTTGCATGGGCCTGATGATAGCATTTTTACTGTAAAACCGGTGAAGAATGACAATGGAAGCACTGATGCACTCAACCTAGAAAATAAAACATCATCTGGAAATAGAATAGGTTTAGTGTCAACACCAACTGATCAATCTGTAGCTGCTCCAAAGAATTTGTCTGATCTTAAACTTCAGCCTAAGGAAGATCATCAGCTGGAAATACCCAAAGATGTTAAGCAGCAAGGTTATTACCTAGAGCTATCTGCTTCAGAGTATAAAGAAGCTGCAGTGAGTAGGTCAGACTCTTCAATTCCAGATGATGGCTTTGTTCATAATGTACCTCATTTATGCACCGAGCAGAGTTCAGAGGAGCAAGTAAATAGTCACATAGAGCCTGAGGAGCGGTGGGAATCATCCCCTCATTCCCCTGGATTTGATGTTCTTGTTCATGATGAAGTGGATAACTTGGGTTATGAGGAAGATTCTGAATATGTAACGGTGGGTGATAGGGATGAGCAAGAGCTGGATGATCAGTACTTTGGGTATGAATTTAAAGATTCAGTTGAGTATGATACTATCTGCCCAGAAGCTGATATTCTGTATGAACAAGAAACATATGATGGTTACAGATTTTTAGATAGGGGTCTTATTCATGCTAATGGCAGAACAATTCATGCTTATCCCAGAGATGTATTCTTAGATCCTAGATTGTCCAGGAAAAGGATTCGGATGTCAGCTGAGATGGCTGCTTATGACAAGAATTTAGATCTTCGTGACCATCTGAGGAGACGTAGAGAAATTAAGGGTCCTCCTGTTTCAAATTTCTTAAGACGAGAATCATCTCCTTTGATGATTCGAAAGCAGGAAAGGCATCAGAGGCATGGCATTGAGCAGCGACCAATTAGAAGATTGACATCACAACTGGGATATAGTGCTATAGATTCGATTGGAGAGGTTGGAACTCTTTCAGTTGCTAACAAGCACAGGTTATTCAGGCATTCCCAGGCCCAGCAACATAAACCAAGGAAGCATTATAGAGAAAAACTACCTAAACGGCAGTTTCTTTCATCTAAAATATCCAGGAAACCAGCTTTTAAACAAAGGGGATTTATTCACGAGTTCTCTGCATTTTCAGGACCTAAGACTCTTGCAGAAATTAAAGAGGAGAAGATGAAGAAGGCTGAAGGAAGTTTACATTGGAAAAGCACATCAACTGATTTTCAGGATCCCAAACCTTTGAGTGAAATTCTCAAGGACAAAAGGACCATGGATCAGTGA 1575 0.4165 MDQDSLKRYTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGQCLNPTCAFRHPPLDGHTGASVPSEPTQTSLPANKTMVPCYFFFNGSCNKGDRCSFLHGPDDSIFTVKPVKNDNGSTDALNLENKTSSGNRIGLVSTPTDQSVAAPKNLSDLKLQPKEDHQLEIPKDVKQQGYYLELSASEYKEAAVSRSDSSIPDDGFVHNVPHLCTEQSSEEQVNSHIEPEERWESSPHSPGFDVLVHDEVDNLGYEEDSEYVTVGDRDEQELDDQYFGYEFKDSVEYDTICPEADILYEQETYDGYRFLDRGLIHANGRTIHAYPRDVFLDPRLSRKRIRMSAEMAAYDKNLDLRDHLRRRREIKGPPVSNFLRRESSPLMIRKQERHQRHGIEQRPIRRLTSQLGYSAIDSIGEVGTLSVANKHRLFRHSQAQQHKPRKHYREKLPKRQFLSSKISRKPAFKQRGFIHEFSAFSGPKTLAEIKEEKMKKAEGSLHWKSTSTDFQDPKPLSEILKDKRTMDQ 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00078 524 Gene3D - 2 63 - -
Gma05g00078 524 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Gma05g00078 524 Pfam Zinc-finger containing family 7 64 IPR041686 -
Gma05g00078 524 Gene3D - 69 121 - -
Gma05g00078 524 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Gma05g00078 524 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 109 IPR000571 GO:0046872
Gma05g00078 524 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Gma05g00078 524 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Gma05g00078 524 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Gma05g00078 524 SMART c3hfinal6 6 34 IPR000571 GO:0046872
Gma05g00078 524 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Gma05g00078 524 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 523 - -
Gma05g00078 524 MobiDBLite consensus disorder prediction 493 524 - -
Gma05g00078 524 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00078 Gma-Chr5 768125 771420 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma05g00078 zf-CCCH_3 4.9e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00078 - - gmx:100813826 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00078 05 768125 771420 Gma05g00078 05 768125 771420 ECH