Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00057 ATGCAGTTCCCCTTATCATTACTTTCTCGCCCCTTCAACTGCATGTTGAAGTTGAATCTGAGTCTGTTTCTGCAAATTTCAAAACCCTCTCTCTCGTTACTCGCCATCACTAGCGAGTGCTCCTTCTTCCTCTTCGCGAAATTCGTATGCGAAGAAGGAGGTAGGGATTCGCGCTCCTGCTTTCTCAGACTGCCTAATTATCTTTTATTCTGCGAAGTAACTGAGAGATTGAAGATGGGAGGAGATGATTCTGGTTTGGAGAGTGACAATTTTGATTGGAACACTGAAGATGAGCTTGAAATTCAGAACTATAACTCGTCGTCTTCATGTTTAACCCTTCCTAATGGAGATGCTGTTACTGGCTCTGGAGAGGCAAGCTCGTCTGCAGTTTTGGCTAATTCCAAGGTGCTTGATCACTTCGTCAGCATGGGATTTTCTAGAGAAATGGTTTCTAAAGTAATTCAGGAATATGGTGAGGAAAATGAAGATAAACTACTTGAAGAACTTCTCACATACAAGGCTCTAGAAAGTTCTTCCCGTCCACAGCAGCGAATTGAGCCAGATCCTTGTTCTTCAGAGAATGCAGGGAGTTCTTGGGATGATTTCTCAGATACTGATATTTTTTCTGATGATGAAGAAATTGCAAAAACTATGTCTGAGAATGATGATACCTTACGGTCTTTGGTGAAAATGGGGTACAAGCAGGTGGAGGCTTTAATTGCCATAGAAAGATTAGGCCCAAACGCCTCACTTGAAGAATTGGTAGATTTTATAGGTGTTGCTCAAATGGCAAAGGCTGAAGATGCTCTTCTGCCTCCTCAAGAAAAGTTACAATACAATGACTATGCTAAGTCCAATAAACGAAGATTATATGATTATGAAGTGCTGGGAAGGAAAAAGCCTAGGGGATGTGAGAAGAAAATCCTCAATGAAGATGACGAGGATGCTGAAGCTCTTCATCTTCCAAATCCGATGATTGGGTTTGGTGTACCTACAGAGTCAAGCTTCATAACACACAGAAGGCTTCCAGAAGATGCCATTGGGCCTCCTTACTTCTATTACGAGAATGTAGCCTTAGCACCAAAAGGTGTTTGGCAAACAATTTCAAGATTCTTGTATGATGTTGAACCTGAGTTTGTAGATTCGAAGTTTTTCTGTGCTGCAGCCAGGAAAAGGGGATATATTCACAATCTCCCCATCCAAAATAGGTTCCCACTTCTACCACTTCCACCGCGCACAATACATGAGGCTTTTCCCCTAACAAAGAAATGGTGGCCCTCATGGGATATTAGGACCAAGCTTAATTGTTTGCAAACATGTATTGGCAGTGCAAAACTAACAGAAAGAATTAGGAAAGCTGTAGAAATCTATGATGAAGATCCACCTGAAAGTGTACAGAAGTATGTTCTTCATCAGTGTAGGAAATGGAATTTGGTTTGGGTGGGAAGAAATAAGGTTGCTCCATTAGAGCCTGATGAAGTAGAAACGCTGTTGGGCTTCCCAAGGAACCACACCAGAGGAGGTGGGATAAGTAGGACTGACAGATACAAGTCACTTGGTAATTCATTCCAGGTTGACACTGTGGCATACCACTTGTCAGTTCTGAAGGAGATGTATCCTAATGGTATCAATCTTCTTTCTCTCTTTTCTGGAATTGGTGGGGCGGAGGTAGCTCTTCATCGGCTTGGCATCCCTCTCAAGAATGTTGTGTCTGTTGAAAAATCGGAAGTTAATAGGAATATTGTTAGAAGTTGGTGGGAGCAAACAAACCAGAAAGGTAATCTATATGATATGGATGATGTAAGGGAGCTAGACGGTGATCGCTTGGAACAGCTGATGAGCACATTTGGTGGTTTTGATCTAATTGTTGGTGGCAGTCCATGTAATAACCTGGCTGGTAGCAACAGGGTCAGCCGGGATGGACTGGAGGGAAAAGAATCTTCTCTCTTCTTTGATTATTTTAGGATTCTAGACTTGCGCGCCGTTAGTCTCTGCGACCCGAAATCCGAACCCGAATTGGTTTCAATCTCCGAGAGAGAGAGAGAGAGAGAGAAACCCCGACCTAGCTCGCAGAATCTACTGCCACTTCTCGCTCTTCAATCGAATTGTATTGCTGGTTTCCTTGCTATGGCTGCCACAGCAACTGCATCTTCGATGGGTCCGCGCTATGCACCAGCAGACCCGACACTCCCTAAACCATGGCGAGGTCTTGTGGATGGCAAGACTGGGTATCTTTACTTTTGGAATCCTGAGACTAATGTCACCCAGTATGAGAGGCCCTCCTCAAGCTCAACTGCCCAGCCAAAGTCTTCTTCAGTGCCCAATTCTTCTGTCCAGGTTCAACAATCGTCTCAAGGGTCGCAATGTGGTCATAGTCCTGATTTCAGTGATAGGTATGATAGAAATGGCAGTGGTGGGTCTAACGAAGCTGGATCACGGAATAATCAGAGTTCCAAAGGGGGAAGTTATGCTTCTCATGATGTTTCAAATGGAACACATGTTGCTGGCAATGTTGATTCTTCTGTCAGAGGTCATGGGGCTTCGGATGCTGGAGCTGGACTATCTCCTGAGTCTTATCGACATCGGCATGAAATATCTGTGACTGGAGACAATGTACCTCCACCCCTTGCATCATTTGGGTCAACTGGCTTTCCATCTGAGCTTCTGAGAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCTCAGGGAAAACCTTGGGGTATTTAGTTCCGGCATTTATTCACCTCAAGCGCTCTGGCAATAACTCCAAAATGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAATTTGGGAAATCATCTAGAATTTCATGTGCTTGTTTGTATGGAGGAGCACCAAAGGGTCCTCAACTGAGAGACATTGATCGTGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTAATCAGGTTTCTTACCTGGTGCTAGATGAGGCAGACAGGATGCTGGATATGGGTTTTGAACCTCAAATTAGGAAAATTGTGAATGAGGTGCCTAATCGCAGGCAAACTCTAATGTTTACTGCAACATGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTAGTCAAGCCTGTACAGGTGAACATTGGGAATGTAGATGAGCTTGTTGCTAATAAGTCCATTACTCAGCATGTTGAAGTATTGCCACCAATGGAGAAACAAAGACGGCTGGAACATATTTTGCGGTCACAGGATTCAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTGACACGTCAGTTTGGAGCTGCTGCTATTCATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAATCAGTTTCGAACTGGGAGGTCTCCTGTGCTTGTGGCCACAGATGTTGCTGCCCGGGGACTGGATATCAAGGACATTAGGGTGGTTGTCAATTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGAAGAGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCATGATGCTAAATATGCTTCAGATCTCATCAAAGTTTTGGAAGGTGCAAACCAGAAGGTGCCTCCAGAACTTCGTGATATGTCATCACGGAGTGGTGGTGGGATGGGCAGATCCAGACGATGGGGTTCtggtggacgaggtggtgattctggatatggtggaaggaataatgactctggatatggtggaaggggtaatgatgcgggatacggtggacgaggtagtgattcAAATTATGGAGGGAGGGGTACTTCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGAGTCCCAGAGGAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGAGGGATCGCTTCAAAAGCGTCAACCGGGATCGCAGTCGTAGTCCTAACAGGGCCGCATTACCTCAACATTCCCAAGGTGGCAGCTTTCACAAGGCAATGATGGAACGTGGTGGATGGGATAGTGATCGCAACAAGAGCTTTAACCGGGACCGAAGCCGCAGTCCTAGCCCTCATAGACAGGTGAAGGGCCCAGCAGTTCGCGAACATTCCCCAGTTTACAGTTTTCATCGATCAATGATGGGACGAGGTCAATCATCTCCGTCATCTCAACGGCAGCGTGCATGCAGTCCTCACCGAAACTCAACCCCCTCCCAGGGTGATGGAAGACATGGTGGATCTCATTCATCTTACAATGGAGAAGTGGAGGAAGGGATGATTCCCGAGGAAGAAGGAATGATAGGTCAAGATGATCCTGTAAATGTGGATTAG 4452 0.4429 MQFPLSLLSRPFNCMLKLNLSLFLQISKPSLSLLAITSECSFFLFAKFVCEEGGRDSRSCFLRLPNYLLFCEVTERLKMGGDDSGLESDNFDWNTEDELEIQNYNSSSSCLTLPNGDAVTGSGEASSSAVLANSKVLDHFVSMGFSREMVSKVIQEYGEENEDKLLEELLTYKALESSSRPQQRIEPDPCSSENAGSSWDDFSDTDIFSDDEEIAKTMSENDDTLRSLVKMGYKQVEALIAIERLGPNASLEELVDFIGVAQMAKAEDALLPPQEKLQYNDYAKSNKRRLYDYEVLGRKKPRGCEKKILNEDDEDAEALHLPNPMIGFGVPTESSFITHRRLPEDAIGPPYFYYENVALAPKGVWQTISRFLYDVEPEFVDSKFFCAAARKRGYIHNLPIQNRFPLLPLPPRTIHEAFPLTKKWWPSWDIRTKLNCLQTCIGSAKLTERIRKAVEIYDEDPPESVQKYVLHQCRKWNLVWVGRNKVAPLEPDEVETLLGFPRNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKEMYPNGINLLSLFSGIGGAEVALHRLGIPLKNVVSVEKSEVNRNIVRSWWEQTNQKGNLYDMDDVRELDGDRLEQLMSTFGGFDLIVGGSPCNNLAGSNRVSRDGLEGKESSLFFDYFRILDLRAVSLCDPKSEPELVSISEREREREKPRPSSQNLLPLLALQSNCIAGFLAMAATATASSMGPRYAPADPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSSTAQPKSSSVPNSSVQVQQSSQGSQCGHSPDFSDRYDRNGSGGSNEAGSRNNQSSKGGSYASHDVSNGTHVAGNVDSSVRGHGASDAGAGLSPESYRHRHEISVTGDNVPPPLASFGSTGFPSELLREVQNAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLVPAFIHLKRSGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPPMEKQRRLEHILRSQDSGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDHDAKYASDLIKVLEGANQKVPPELRDMSSRSGGGMGRSRRWGSGGRGGDSGYGGRNNDSGYGGRGNDAGYGGRGSDSNYGGRGTSASGRGGGRGFDYESQRNDRDRSPDKGSSWRDRFKSVNRDRSRSPNRAALPQHSQGGSFHKAMMERGGWDSDRNKSFNRDRSRSPSPHRQVKGPAVREHSPVYSFHRSMMGRGQSSPSSQRQRACSPHRNSTPSQGDGRHGGSHSSYNGEVEEGMIPEEEGMIGQDDPVNVD 1483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00057 1483 Pfam DEAD/DEAH box helicase 901 1071 IPR011545 GO:0003676|GO:0005524
Gma05g00057 1483 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 1028 1036 IPR000629 -
Gma05g00057 1483 Gene3D DNA Methylase, subunit A, domain 2 438 523 - -
Gma05g00057 1483 Gene3D - 1087 1258 IPR027417 -
Gma05g00057 1483 CDD WW 731 760 IPR001202 GO:0005515
Gma05g00057 1483 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 835 1335 - -
Gma05g00057 1483 MobiDBLite consensus disorder prediction 177 197 - -
Gma05g00057 1483 ProSiteProfiles SAM-dependent methyltransferase DRM-type domain profile. 338 667 IPR030380 GO:0006306
Gma05g00057 1483 SMART ultradead3 896 1099 IPR014001 -
Gma05g00057 1483 Gene3D Vaccinia Virus protein VP39 337 421 IPR029063 -
Gma05g00057 1483 Gene3D Vaccinia Virus protein VP39 534 664 IPR029063 -
Gma05g00057 1483 ProSiteProfiles WW/rsp5/WWP domain profile. 728 762 IPR001202 GO:0005515
Gma05g00057 1483 Pfam C-5 cytosine-specific DNA methylase 544 658 IPR001525 GO:0008168
Gma05g00057 1483 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 877 905 IPR014014 GO:0003724
Gma05g00057 1483 MobiDBLite consensus disorder prediction 801 837 - -
Gma05g00057 1483 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 543 659 IPR029063 -
Gma05g00057 1483 MobiDBLite consensus disorder prediction 1420 1453 - -
Gma05g00057 1483 MobiDBLite consensus disorder prediction 1247 1483 - -
Gma05g00057 1483 Gene3D - 725 778 - -
Gma05g00057 1483 MobiDBLite consensus disorder prediction 1323 1353 - -
Gma05g00057 1483 Pfam Helicase conserved C-terminal domain 1108 1216 IPR001650 -
Gma05g00057 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 949 1233 IPR027417 -
Gma05g00057 1483 MobiDBLite consensus disorder prediction 756 856 - -
Gma05g00057 1483 MobiDBLite consensus disorder prediction 756 792 - -
Gma05g00057 1483 ProSitePatterns WW/rsp5/WWP domain signature. 734 760 IPR001202 GO:0005515
Gma05g00057 1483 SUPERFAMILY WW domain 721 761 IPR036020 GO:0005515
Gma05g00057 1483 SMART helicmild6 1136 1216 IPR001650 -
Gma05g00057 1483 MobiDBLite consensus disorder prediction 1376 1406 - -
Gma05g00057 1483 CDD SF2_C_DEAD 1096 1225 - -
Gma05g00057 1483 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 908 1082 IPR014001 -
Gma05g00057 1483 Gene3D - 855 1086 IPR027417 -
Gma05g00057 1483 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1111 1255 IPR001650 -
Gma05g00057 1483 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 346 540 IPR029063 -
Gma05g00057 1483 SMART ww_5 729 762 IPR001202 GO:0005515
Gma05g00057 1483 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 835 1335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00057 Gma-Chr5 496795 515214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00057 875 1254 Eukaryotic Initiation Factors Gene Family AT3G19760 33.943 7.85e-66 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00057 K12823 - gmx:100786511 1392.48