Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00056 ATGGAATTTGATTCAAGCTTTCAAGGGCCACAATACCTTTCAAGCCCTTTCCCACCTACGACTCAAACCATGTTTCCTTCGCAAAGCTCGATTCTAATTCCACCATCACCCCAGCCCATCATGTTTCACCCCAACAACACTACTTTTCATCATTTTCAAGACTTCATCACGAATGTGCCTACCTTTGTGATGGAGGGTCCTTCCTCCAACATCACCACCCCCTTGTATAGAGGGTCTTTCCTTGGAGGCTTTGTTAACATCCACCATCACCACCCCAACAAAATGGATGCTTTGCATGGTCACCACCATAAAGGAAAAATCATTTGGGATTTTTCACAACAATTGATGGTTCATTCATCTGAAGCTTCTTCCTCCAAGTCATCATCACCTCTTTCTCTCTCTAATGAGTATGGATTGGTGATGGGTGACTATCATTGGCACACTAATCAGAGGAGTGTGCAACAAAATATGAAGGTGGTAAAGGTGAATATGGATACCAACATTGCAAATGATAACATAATCAAAGGACAGTGGACTCTGGAACAGGACAATGCTCTTGTGGAATTGGTAAACCAATTCGGACTTAAGAAATGGTCGCAAATTGCAAAGTTACTGCCCGGAAGGATTGGGAAGCAGTGTCGGGAAAGATGGCACAACCATCTCAAGCCAAACATTAAGAAGGACTCATGGACCCTGGAGGAAGACATGATTCTAATAAAAGCCCATAAAAAAGTTGGAAACAAATGGTCGGAGATTGCAAAAAGGTTGCCTGGTAGGCCTGAGAACACCATTAAGAACCATTGGAACACCACCAAACGGCGCCAAAATTGCAAGAGACACAAGCACACAATTTATGAAGGGTCACTCCTCCATGGCTACATCAAAAAGGTTAGTGCTGCTGAAGATGCTACAAAAGAACCAAAGAAGAATAAGATGCAGTTGTGA 945 0.4307 MEFDSSFQGPQYLSSPFPPTTQTMFPSQSSILIPPSPQPIMFHPNNTTFHHFQDFITNVPTFVMEGPSSNITTPLYRGSFLGGFVNIHHHHPNKMDALHGHHHKGKIIWDFSQQLMVHSSEASSSKSSSPLSLSNEYGLVMGDYHWHTNQRSVQQNMKVVKVNMDTNIANDNIIKGQWTLEQDNALVELVNQFGLKKWSQIAKLLPGRIGKQCRERWHNHLKPNIKKDSWTLEEDMILIKAHKKVGNKWSEIAKRLPGRPENTIKNHWNTTKRRQNCKRHKHTIYEGSLLHGYIKKVSAAEDATKEPKKNKMQL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00056 314 Gene3D - 228 286 - -
Gma05g00056 314 CDD SANT 178 221 IPR001005 -
Gma05g00056 314 Pfam Myb-like DNA-binding domain 178 235 - -
Gma05g00056 314 Gene3D - 174 226 - -
Gma05g00056 314 PANTHER MYB PROTEIN-RELATED 129 297 - -
Gma05g00056 314 PANTHER MYB DOMAIN PROTEIN 100-RELATED 129 297 - -
Gma05g00056 314 SMART sant 174 223 IPR001005 -
Gma05g00056 314 SMART sant 226 274 IPR001005 -
Gma05g00056 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 225 IPR017930 -
Gma05g00056 314 ProSiteProfiles Myb-like domain profile. 222 272 IPR001005 -
Gma05g00056 314 SUPERFAMILY Homeodomain-like 172 268 IPR009057 -
Gma05g00056 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 276 IPR017930 -
Gma05g00056 314 CDD SANT 229 272 IPR001005 -
Gma05g00056 314 ProSiteProfiles Myb-like domain profile. 170 221 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00056 Gma-Chr5 488092 490858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00056 173 300 MYB Transcription Factor Family AT4G18770 62.791 2.45e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma05g00056 Myb_DNA-bind_6 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00056 K09422 - gmx:102668949 641.728