Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00052 ATGGCTTCCAAATATGATAACAAGTACAACAATCCATCATTTGTTGTTGTTATCTTCACAGTGGCCACCCTATTGTGTTTTTTCTCCCACTCAGCACTATCTGATCCAAGAATCTCAGAAGTGGGGCACTACTGCAGCACACAGAAGTCACCAACAAGTGGTGATTACTTCCCCATATTCACCAAAGAAATGGAAAAACTTCAAGAAGTTGTGACAAAACAAAACTGGGGAACTCACTCTGAGGGCATGTCATCAACCACTCCTATCTATGGCTTGGCACAATGCTTCCAAGACCTTTCCAGCATTGATTGCCTTCAGTGCTTTGCATCCAGCCGCACCAAGCTCCCTCGCTGCCTCCCTTCGGTTTCGGCTCGAATTTACCTTGATGGCTGCTTCCTTCGCTATGACAACTACAGTTTCTACACTGAGGACACTGACCCTTTGAGGGACACAGTGAACTGCACCTCACAGTATGGTGCTGTGGTTGGTGATGGTGAGAAGTTGGTGTTTGCTGAGAGTGTTGCCAAAGTGGTTGAGAGTGTGGTGAGGGTGGCTGTGAATGAGGGAAGAGGCATTTTTGCAGTGGGAGAAGGTGGGGGAGTTTATGCCTTGGCACAGTGCTGGAAAACTGTTGGGGTAAAAGGGTGTAGTGATTGCTTAAGGAAAGCTGAAAATGAAGTTAAAGGGTGTTTGCCTAAGAGGGAAGGGAGGGCCTTGAATACTGGGTGTTATTTGAGATATTCAACTGTTAAGTTCTACAATCAAGGAGGTGAAGATGGCCAAGGAGATGATTCTTCCAGAAAACGAGCCATCGTAGCAGCAGGGTCAGTCTTGGCTGCAGCTGTTGTAGTGCTCACGCTCGCGGCCTCTTATGTGGCCTTCACCAAAAAGAGAAAAAAAAACAATTTTATCGAGGCTCCTCCTTCCTTAAAGAATTCTAGCTTGAATTACAAATATGAAACTCTTGAGAAGGCCACAGATTATTTCAGCTCTTCAAGAAAAATAGGCCAAGGAGGAGCTGGTTCTGTATACAAAGGGACTTTGCCAAATGGGAATGATGTTGCTGTTAAGAGATTGGTCTTCAATAATAGGCAATGGGTGGATGATTTCTTCAATGAAGTGAATTTGATTAGTGGAATGCAACACAAGAACCTTGTCAAACTATTGGGCTGTAGCATTGAAGGCCCTGAGAGCCTCATTGTGTATGAGTACCTACCTAACAAGAGCTTAGATCAATTCATTTTTGAAAAGGACATAACAAGGATTCTTAAAtggaagcagcggtttgaaataattcttggaactgcagaaggacttgcatatcttcatggaggctctgaaataagaatcattcatcgagacataaagagtagcaatgttcttctggatgagaatcttaaccccaagattgcagattttggtcttgcCCGGTGTTTCGGTACTGATAAAACGCATCTAAGCACTGGAATTGCTGGAACATTAGGTTACATGGCTCCTGAGTATCTCATTCAAGGACAACTTACAGATAAAGCAGATGTCTATAGTTTTGGAGTACTTGTTCTGGAGATTGCAAGTGGAAGGAAGAATAATGTCTTCCGTGAGGATTCTGGTTCCCTTTTGCAAACAGTTTGGAAACTTTACCAATCAAACAGATTGGGTGAAGCTGTTGATCCTGGCTTGGGAGAAGATTTTCCTGCAAGAGAAGCATCAAGGGTGTTTCAAATTGGATTGCTATGCACACAAGCTTCTGCTTCCCTGAGGCCATCCATGACTCAAGTTGTTAGCATCTTAAGTAATTCAAATTTGGATGCCCCTATACCAAAACAACCTCCATTTTTGAACTCTAGATTGCTAGATCAAGCATCTCCATTAGGTTTTAGCATAGGCAGCTCCTCATCAAACACATTTAAGAAGACTGGTGTGTCCTACAGCCCCTCTGAGTTCTCTAGCACATGCAGCTTAATTGGGCCAACAAGAAATGAAGAAACAATTATGGAAGCTTGA 2004 0.4012 MASKYDNKYNNPSFVVVIFTVATLLCFFSHSALSDPRISEVGHYCSTQKSPTSGDYFPIFTKEMEKLQEVVTKQNWGTHSEGMSSTTPIYGLAQCFQDLSSIDCLQCFASSRTKLPRCLPSVSARIYLDGCFLRYDNYSFYTEDTDPLRDTVNCTSQYGAVVGDGEKLVFAESVAKVVESVVRVAVNEGRGIFAVGEGGGVYALAQCWKTVGVKGCSDCLRKAENEVKGCLPKREGRALNTGCYLRYSTVKFYNQGGEDGQGDDSSRKRAIVAAGSVLAAAVVVLTLAASYVAFTKKRKKNNFIEAPPSLKNSSLNYKYETLEKATDYFSSSRKIGQGGAGSVYKGTLPNGNDVAVKRLVFNNRQWVDDFFNEVNLISGMQHKNLVKLLGCSIEGPESLIVYEYLPNKSLDQFIFEKDITRILKWKQRFEIILGTAEGLAYLHGGSEIRIIHRDIKSSNVLLDENLNPKIADFGLARCFGTDKTHLSTGIAGTLGYMAPEYLIQGQLTDKADVYSFGVLVLEIASGRKNNVFREDSGSLLQTVWKLYQSNRLGEAVDPGLGEDFPAREASRVFQIGLLCTQASASLRPSMTQVVSILSNSNLDAPIPKQPPFLNSRLLDQASPLGFSIGSSSSNTFKKTGVSYSPSEFSSTCSLIGPTRNEETIMEA 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00052 667 Pfam Protein tyrosine and serine/threonine kinase 332 597 IPR001245 GO:0004672|GO:0006468
Gma05g00052 667 CDD STKc_IRAK 335 597 - -
Gma05g00052 667 SUPERFAMILY Protein kinase-like (PK-like) 314 617 IPR011009 -
Gma05g00052 667 Pfam Salt stress response/antifungal 48 138 IPR002902 -
Gma05g00052 667 Pfam Salt stress response/antifungal 169 249 IPR002902 -
Gma05g00052 667 Gene3D - 38 140 IPR038408 -
Gma05g00052 667 Gene3D - 165 252 IPR038408 -
Gma05g00052 667 Gene3D Phosphorylase Kinase; domain 1 289 404 - -
Gma05g00052 667 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 27 655 - -
Gma05g00052 667 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 655 - -
Gma05g00052 667 Gene3D Transferase(Phosphotransferase) domain 1 405 605 - -
Gma05g00052 667 ProSiteProfiles Protein kinase domain profile. 329 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00052 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Gma05g00052 667 SMART serkin_6 329 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00052 667 ProSiteProfiles Gnk2-homologous domain profile. 38 140 IPR002902 -
Gma05g00052 667 ProSiteProfiles Gnk2-homologous domain profile. 149 252 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00052 Gma-Chr5 453464 457363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00052 16 494 Receptor kinase-like Gene Family AT5G40380 54.339 5.45e-177 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma05g00052 PK_Tyr_Ser-Thr 4.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00052 - - gmx:100819689 1268.45