Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00046 ATGCCAATGGAAACTCCAAGCTCCCACTCTCTCTTCGCCCACATCGCCTCCCGAGAACTCTTCCGAGGTATATTGCACTTCTCTCTCTCTCTCTCTCTCTCTCAAACTGCACAACATTTTCTCATTTTCTTTCGCTGTTTCGCAGTTCCAAAACGACATCGTATGGACGGATTCGTCTCCGGCTTCAATGAAACTGGTCTCCTCGCCGTACAGCACAACGCCGAGGACACCATTCCCCTCTCTCTCTCCTTCTGCAAGACTTCAAAATTTGGACACATTCTCGCGGTGTCCGACGAGGACGGTTACGTCACCTTGTTTGATACTCGCCGCAACTTCCCTGTTACTGCAAACTTTGAAGAAAACTCAGAGAAAGTGAAGATTTGCCATTGGGTTTCACATCAGAATGCTGTTTTTGATACCTGTTGGATTAAGGAAGATACGCAGATTCTCACTGCTTCTGGTGATCAAACAATAAAATTATGGGATGTTCAAGAACAGAAGTGTCTTGGAGTGTTGACTGGGCACACAGGAAGTGTGAAATCTATGTGTTCTCATCCAACTAATTCTGATATTATTGTCTCTGGTTCTAGAGATGGATCCTTTCGTATTTGGGACTTGAGATGCAAATCCACTGCTAAGAGTAGGCATGGAGAAGTTGGCATATGTTCAATGGGTGGTGTCAAAGGAGCACATATTTCATCTCAAGCAAGACGAACTAGGAGAGGAAAGGCTGCTCCAATGAGCATTACATCTGTTCTTTGTCTCAAGGACCAGGTTTCTATAGCCACTGCTGGGGCGGTGGATAGTGTGTTGAAGTTCTGGGATACCAGAAATTTGAAAAGTACTGTCACTCAGACATCTCCTAGTCCTCAGTCAGCTGAAAAGCAAACATTACATGGAATATCAAGCTTGTCCCAAGATGAAAGTGGACTTTTTCTTTCAGCCTCTTGCATGGATAATCGAATTTATTTGTATAACACTCTTCAACTTGACAAAGGGCCCTTAAAATCTTTTTCTGGGTGCCGAATTGAATCATTTTTTGTAAAGTCTGCAATTAGCCCTGATGCATCAAACATAGTCAGTGGTTCTAGTGATGGAAATGCCTATGTTTGGAAGGTTGACAAACCTCTGGAAGATCCTACTATTTTGAAAAGCCATGATGATGGTGAAGTTACAGCAGTTGACTGGTGTAGCTCTGAAATTGGGAAATTAGCAACATGTTCTGATGATTTCACAGTTCGAACATGGAATAAAAACAGTTATGTCTCTAGTACACAATGTGCATCTGCCATCCGAAGAAGAGTAATGGCAATTCCTAGTATAGAGTGCAAAATGCTTTTAAATAATGGAAAAAGGTACTCTAAGACAAATGAAGATGCTTTTTTACCCGATGATGCTCTACACCCAATTACGTCACCCACTCCAATCACACCACCTAAAATGAACATATCTGAAGGCCATACGAACCAACTTTCCTCAAGATTAGATCTAAATGCATCCTCTGAAAAAACTCCAGAATCTGCTTTGAAGAGCCCCTCATCTGTATTGAATCCTCCATCATCCCTAAAAAGAACTATCCGAGACTACTTTCTAGCATCTTCAAGAACCTTGTAG 1614 0.4219 MPMETPSSHSLFAHIASRELFRGILHFSLSLSLSQTAQHFLIFFRCFAVPKRHRMDGFVSGFNETGLLAVQHNAEDTIPLSLSFCKTSKFGHILAVSDEDGYVTLFDTRRNFPVTANFEENSEKVKICHWVSHQNAVFDTCWIKEDTQILTASGDQTIKLWDVQEQKCLGVLTGHTGSVKSMCSHPTNSDIIVSGSRDGSFRIWDLRCKSTAKSRHGEVGICSMGGVKGAHISSQARRTRRGKAAPMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKSTVTQTSPSPQSAEKQTLHGISSLSQDESGLFLSASCMDNRIYLYNTLQLDKGPLKSFSGCRIESFFVKSAISPDASNIVSGSSDGNAYVWKVDKPLEDPTILKSHDDGEVTAVDWCSSEIGKLATCSDDFTVRTWNKNSYVSSTQCASAIRRRVMAIPSIECKMLLNNGKRYSKTNEDAFLPDDALHPITSPTPITPPKMNISEGHTNQLSSRLDLNASSEKTPESALKSPSSVLNPPSSLKRTIRDYFLASSRTL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00046 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 130 164 - -
Gma05g00046 537 Gene3D - 30 214 IPR015943 GO:0005515
Gma05g00046 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 207 - -
Gma05g00046 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 214 IPR001680 GO:0005515
Gma05g00046 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 374 IPR001680 GO:0005515
Gma05g00046 537 MobiDBLite consensus disorder prediction 477 520 - -
Gma05g00046 537 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Gma05g00046 537 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Gma05g00046 537 PRINTS G protein beta WD-40 repeat signature 149 163 IPR020472 -
Gma05g00046 537 SMART WD40_4 291 326 IPR001680 GO:0005515
Gma05g00046 537 SMART WD40_4 165 205 IPR001680 GO:0005515
Gma05g00046 537 SMART WD40_4 123 162 IPR001680 GO:0005515
Gma05g00046 537 SMART WD40_4 331 372 IPR001680 GO:0005515
Gma05g00046 537 SMART WD40_4 233 275 IPR001680 GO:0005515
Gma05g00046 537 SMART WD40_4 376 417 IPR001680 GO:0005515
Gma05g00046 537 SMART WD40_4 64 107 IPR001680 GO:0005515
Gma05g00046 537 PANTHER BNAA06G31940D PROTEIN 64 532 - -
Gma05g00046 537 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 64 532 - -
Gma05g00046 537 SUPERFAMILY WD40 repeat-like 84 421 IPR036322 GO:0005515
Gma05g00046 537 Gene3D - 215 449 IPR015943 GO:0005515
Gma05g00046 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 171 IPR001680 GO:0005515
Gma05g00046 537 ProSitePatterns Trp-Asp (WD) repeats signature. 149 163 IPR019775 -
Gma05g00046 537 MobiDBLite consensus disorder prediction 464 520 - -
Gma05g00046 537 Pfam WD domain, G-beta repeat 129 162 IPR001680 GO:0005515
Gma05g00046 537 Pfam WD domain, G-beta repeat 382 417 IPR001680 GO:0005515
Gma05g00046 537 Pfam WD domain, G-beta repeat 167 205 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00046 Gma-Chr5 411819 415215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00046 133 381 U-box Gene Family AT1G04510 25.092 1.46e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00046 K11790 - gmx:100775857 987.638