Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00044 ATGGCCTCTTCTAGCTACTCCAATTCTCCATGTGCAGCCTGCAAGTTTTTGAGAAGGAAGTGCATGCCGGATTGCATTTTTGCCCCATATTTCCCACCAGAAGAGCCACATAAATTTGCAAATGTTCACAAGATATTTGGTGCAAGCAACGTGAGCAAACTCCTCAATGAGGTGCAACCCCATCAAAGAGAGGATGCTGTGAACTCTCTGGCCTATGAAGCCGAAGCAAGGATCAAAGATCCAGTGTATGGTTGTGTTGGGGCCATTTCAGTGCTCCAAAAGCAAGTCCTTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATAGTGCTTGCAATGAAATTCCAAACACCACTACTCATCATGGAGGGAGAAGGATGAGTGATGATGGAGGAGGTGGTGGTTCCTCACTTGCTCACTCTCATGGTTTCTATTATCCTTCTAATTGGAACAATGATCCTTGTGGAAATAGTAATGGTTACCCCAGAGGCGATATATAA 513 0.4503 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPHKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQKQVLRLQKELDATNADLIRYSACNEIPNTTTHHGGRRMSDDGGGGGSSLAHSHGFYYPSNWNNDPCGNSNGYPRGDI 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00044 170 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Gma05g00044 170 Coils Coil 89 109 - -
Gma05g00044 170 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Gma05g00044 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 160 - -
Gma05g00044 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00044 Gma-Chr5 388781 389590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00044 4 130 AS2 family AT3G27650 79.528 9.69e-73 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma05g00044 LOB 1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00044 - - gmx:100788656 328.946