Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00034 ATGGAATCACCCGGTAACGAGCATGTGGTGGGTGGCGCAGAACATAACGACGTCGTTACGCCCTTTTCCCACAGAGAAGAACCCCACAATTCCCAACCCCTCACCGGCGACGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCCCAATTTATCAAGCACTTTGGTAAGTATGGTGAGATCACGGATTCGGTCATCATGAAGGACAGGAAAACTGGGCAGCCTCGTGGATTTGGGTTTATAACGTATGCGGATCCCTCTGTGGTCGATAAAGTCATTGAGGATCCTCATATCATCAATGGCAAACAAGTTGAGATTAAGCGGACGATACCGAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACACGCTATGGCGAAGTTAAAGATCACCAAATAATGCGGGACCACTCTACCAACCGATCTCGTGGCTTTGGGTTTATCACATTTGACTCTGAAGAAGCAGTTGATGATCTGCTGTCCATGGGAAACAAAATTGACTTTGCTGGATCTCAGGTGGAAATCAAGAAAGCTGAACCAAAGAAGCCAAGCTCAGCACCTCCATCATCCAAGCGCCATAACGACTCTAGGTCTTCATATAGCAGTGGTGGATATGGAGATACTTACGATGGATTTGGTGGCAGCTTTGGAATGGGGGGTGGGTATAGGTCAGGTGGTGCTTATGGTGGTGGTAGGGGTGGTGCTTATGGTGGCTTTGGAAGTGAATTTGGTGGGTATGGAGGATATGCTGGTGAGATGGGGCCGTATAGAGGAGATCTCTCCCTCGGGTATGCTGGTCGTTATGGTGGAAACTTTAGCAGAGGGTATGATCTTGGTGGGTATGGCGGTCCTAGTGAGAATTATGGAGCATATGGTGCAGGTGGGGGTTCTTCTGGCGGTGGTGGTGCCTACCAAAGTGGCTATGATGGAAACCTAGGAGGTGGATATGGAGGGGCTAGTGGTGGCCCCTTCTATGGGAGCAGTAGAGCAGGATACAGTGCTGGTCGATATCATCCTTATGGAAGATAA 1113 0.4825 MESPGNEHVVGGAEHNDVVTPFSHREEPHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHIINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIDFAGSQVEIKKAEPKKPSSAPPSSKRHNDSRSSYSSGGYGDTYDGFGGSFGMGGGYRSGGAYGGGRGGAYGGFGSEFGGYGGYAGEMGPYRGDLSLGYAGRYGGNFSRGYDLGGYGGPSENYGAYGAGGGSSGGGGAYQSGYDGNLGGGYGGASGGPFYGSSRAGYSAGRYHPYGR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00034 370 MobiDBLite consensus disorder prediction 215 230 - -
Gma05g00034 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Gma05g00034 370 SUPERFAMILY RNA-binding domain, RBD 128 234 IPR035979 GO:0003676
Gma05g00034 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Gma05g00034 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Gma05g00034 370 MobiDBLite consensus disorder prediction 201 230 - -
Gma05g00034 370 Gene3D - 42 121 IPR012677 -
Gma05g00034 370 Gene3D - 123 236 IPR012677 -
Gma05g00034 370 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 370 - -
Gma05g00034 370 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 370 - -
Gma05g00034 370 SUPERFAMILY RNA-binding domain, RBD 32 120 IPR035979 GO:0003676
Gma05g00034 370 SMART rrm1_1 43 114 IPR000504 GO:0003723
Gma05g00034 370 SMART rrm1_1 131 204 IPR000504 GO:0003723
Gma05g00034 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00034 Gma-Chr5 249293 253944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00034 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 8.09e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00034 K12741 K14314 gmx:113001701 580.096