Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00028 ATGGCTAGGAGCTGGCTTATTGACATTGGAGGATTTGCAAGGAAAGTGAAAAATACTAATCTGTCAACAGATGATCAAATAAAGGACTGTGGAACATATCTTGAATGCCAGAAATGTCATTATCATATTGATAACAATGATGTTTCTCATGAGTGGCCTGGCTTTCCTGTGGGTGTGAAGTTTGATCCTTCTGATGTTGAGCTTTTAGAGCATTTAGCAGCAAAGTGTTGTATTGGAGACAGAGAGCCACACATGTTTATTCACGAGTTCATCCCAACTCTAGAAGGAGAGCTAGGTATTTGCTACACTCATCCACAAAATCTTCCAGGTGCTAAGACGGATGGGAGTAGTGTCCATTTCTTTCACAAAACAGTTAATGCATATGCTACTGGACCAAGGAAGCGTCGAAAGATTCATCATCAAGATGGTATGACTGAGGAGCATGTACGCTGGCACAAGACTGGTAGGACCAAAGCTGTGATAGAAGATGGAGTGCATAAGGGTTTTAAGAAGATCATGGTTCTCTATATAAGATCTAAGAAAGGCTCCAAACCATATAAAACCAATTGGGTGATGCATCAGTACCATCTAGGGAGTGAAGAAGATGAGAAGGATGATGAATATGTGGTTTCAAAAATATTTTATCAACGGCAGAAGCAGAGTGAGAAGAATGAGGAGAATACAGTGGTTGAAGATTCTAACATAGCAGCACAAGCAGGTCCAAGAACCCCAAAACCAAATCCCCCTACTCGACCTTGTACGGGAAAATGTGATGACAATTTTGATGAAAATGAACTTCTGTCATTCATCCAGGATGCCAAGCCTATACCTGGAGAATCACATGCACCACCATACGATGTTCAAGATGAGGACAATAAGGACGACCCTGCATGGTTGGCTGGTGAATCACAAGCTGACTTTGATGGCTTGGAAGACATATTATTATGTAAGGATATGTTAGATTCATCTTCTCTCTTAAACCATTCTGGATTGAGCTCCACTTATAATGCCAATGCAAACAAGTTGGTTGCACCTGGAACCGATAATGATTATGCATCTTATGGAGTTTCTGTCCTGGACACCCTTGAATTTGATACTCCTCCTGATTTTGATCTTTCTAATTTGCAATTTGGTTCTCAAGACAGCACCCTTCAGTGGATTGACACACCATAA 1173 0.4092 MARSWLIDIGGFARKVKNTNLSTDDQIKDCGTYLECQKCHYHIDNNDVSHEWPGFPVGVKFDPSDVELLEHLAAKCCIGDREPHMFIHEFIPTLEGELGICYTHPQNLPGAKTDGSSVHFFHKTVNAYATGPRKRRKIHHQDGMTEEHVRWHKTGRTKAVIEDGVHKGFKKIMVLYIRSKKGSKPYKTNWVMHQYHLGSEEDEKDDEYVVSKIFYQRQKQSEKNEENTVVEDSNIAAQAGPRTPKPNPPTRPCTGKCDDNFDENELLSFIQDAKPIPGESHAPPYDVQDEDNKDDPAWLAGESQADFDGLEDILLCKDMLDSSSLLNHSGLSSTYNANANKLVAPGTDNDYASYGVSVLDTLEFDTPPDFDLSNLQFGSQDSTLQWIDTP 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00028 390 MobiDBLite consensus disorder prediction 219 258 - -
Gma05g00028 390 MobiDBLite consensus disorder prediction 272 293 - -
Gma05g00028 390 Gene3D NAC domain 64 221 IPR036093 GO:0003677|GO:0006355
Gma05g00028 390 SUPERFAMILY NAC domain 40 216 IPR036093 GO:0003677|GO:0006355
Gma05g00028 390 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 1 388 - -
Gma05g00028 390 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 388 IPR044799 GO:0003700
Gma05g00028 390 Pfam No apical meristem (NAM) protein 56 197 IPR003441 GO:0003677|GO:0006355
Gma05g00028 390 ProSiteProfiles NAC domain profile. 55 216 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00028 Gma-Chr5 203413 208107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00028 38 218 NAC Transcription Factor Family AT1G28470 56.593 1.49e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma05g00028 NAM 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00028 - - gmx:100780662 813.913