Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00027 atgggatctggcaatgaggttcactcagttggggacttcaatttagattccaagtggctagtagatcccaaacaactatttattggtccaaaaattggggagggtgctcatgccaaagtatatgaaggaaaatataaaaatcaaaatgttgctgttaagattatcaacaagggagaaactctggaagagatttctaggagagaggctcggtttgcaagagaggttgctatgttgtcgagagttcaacacaaaaatctggttaagTTTATTGGGGCTTGCAAAGAACCTGTCATGGTTATAGTAACTGAACTTCTATTGGGTGGGACATTGCGCAAATATCTCTTGAATATGCGTCCAAAGTGCTTGGATATGACTGTGGCTATTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGTGATCTTAAACCCGATAACTTGATCTTGACAGATGATCATAAGGCAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACTGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCAGAACTATACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGTTACCCTTTGAAGGCATGTCTAATCTACAGGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCCAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAAGAGGATCCGAATGATCGACCAAATTTCAGTCAAATCATACAGATGCTCCTTCGATATCTCTCCACCGTTTCACCACCAGAACCGGTTGTTCCTCTGCGGATTACTTCATCTGAGAACGCGGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGGCTCTAGAGAAACCACAACAGCCAAAGGGTTTTTCTTCTGCTTTAACCAGTGTTACTGA 1041 0.3218 MGSGNEVHSVGDFNLDSKWLVDPKQLFIGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETLEEISRREARFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDMTVAIGFALDIARAMECLHSHGIIHRDLKPDNLILTDDHKAVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPNDRPNFSQIIQMLLRYLSTVSPPEPVVPLRITSSENAVLPPESPGTSALMLGRDGSRETTTAKGFFFCFNQCY 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00027 346 Gene3D Transferase(Phosphotransferase) domain 1 107 297 - -
Gma05g00027 346 PANTHER SERINE-THREONINE PROTEIN KINASE 1 328 - -
Gma05g00027 346 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Gma05g00027 346 CDD STKc_MAP3K-like 32 286 - -
Gma05g00027 346 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Gma05g00027 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Gma05g00027 346 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00027 346 PANTHER PROTEIN KINASE ATN1 1 328 - -
Gma05g00027 346 SUPERFAMILY Protein kinase-like (PK-like) 17 310 IPR011009 -
Gma05g00027 346 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Gma05g00027 346 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Gma05g00027 346 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Gma05g00027 346 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Gma05g00027 346 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g00027 346 PIRSF TyrPK_CSF1-R 115 312 - -
Gma05g00027 346 PIRSF TyrPK_CSF1-R 12 125 - -
Gma05g00027 346 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00027 Gma-Chr5 197831 201779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00027 1 341 MAP Kinase Kinase Kinase AT3G27560 76.836 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gma05g00027 PK_Tyr_Ser-Thr 8.3e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00027 - - gmx:100792887 696.427