Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00024 ATGCTGAAAGCAAGCTCTCTATCCTTTCTGGTAGCAATGCCCTCTGCAACTGCAAGCTTCGGATTCTTCTTCTGTCGACAACGCCTTTCTTCTTCTTTCCCCTTCCCTCCGCGTCCAAGACTCCTCTCCACCACTCCCACCCCATACCCTCTCCAATACGAACTCATCATCAACCGTCCTTCTTACCCCGACTCTCCCCGCCCACCACCTGCTCGACCTATTGACTCCCCTGAACCCGAACTCAACAAGGCCCAGAGGAAGTACTACAACAAACGCAGAAAGAGGATGTACGGCTCCGACGAAGATGAATCCCGACGCCCCGACGAGACCTTCGTGGAGTTGAAGCCCGAGGTGGTGGACTTTCCCACTCTGCACAAGAGGGAGGAAGAGCTTTACTTCTATGACGCCTTTACTTATCCCTGGGAGAAGGACAAGCATTACAAGATGGTTTACCAGCTGGAGAAGAAGTACTTTCCTGATCAATGCCTCGACAAGGCGTTTCTCCAACCGGGACAGTCAaatgctaatgctaatgctaatgctaatgGGAAGGGAAAGGGTAGGAAGAAAGTTGTTGGTGGTGGCGGTGGTGATGAAAAGTTGGTGTTTTTTGAGGAGGGGAATGTGGAGGAGAAGGGCGAGGAGAGTGGAAGTGGAAGCAGACAACTTAAGGAGAAGAAGGTTGAGGACTTCTTCAAGGGTTTGAAGAAGGATCCTAGTCCTAGTCTTAACAAGGATGTTCAAGTTGGAGAGCCTTTTCTTTCCTCAAGGAGGACTGGTCTTCCTCCCGTCTGGGATACTCCTCATGGCACTGTGCTCTTGGTCAACAAACCAAAAGgttggacttcattcacggtttgtggaaaGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGtcatgctgggactcttgacccaatggctacgggtttattgattgtttgtgttggtaaagcaacgaaactggtagacagatatcaagggatgattaagggttatagtggggttttccgcttgggggaggctacttcaacatgggatgctgattcaccaGTCATTCAACGTGAGCCATGGGAGCACATCAAAGATGAAGATATAAAGAGAAATGCTTTGTCCTTTTCTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGCGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCCAGACGAATATCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTGACATGTTCCAAAGGGACATATATTCGGTCACTCTGCGCTGATTTTGGGAAGGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAATATTCAGCAGATGATGCATGGGAGTTTCAAGAGCTGGAAGAGGCTATCACCAAAAATTATCTCTAA 1470 0.4116 MLKASSLSFLVAMPSATASFGFFFCRQRLSSSFPFPPRPRLLSTTPTPYPLQYELIINRPSYPDSPRPPPARPIDSPEPELNKAQRKYYNKRRKRMYGSDEDESRRPDETFVELKPEVVDFPTLHKREEELYFYDAFTYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLQPGQSNANANANANGKGKGRKKVVGGGGGDEKLVFFEEGNVEEKGEESGSGSRQLKEKKVEDFFKGLKKDPSPSLNKDVQVGEPFLSSRRTGLPPVWDTPHGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNALSFSGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFQELEEAITKNYL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00024 489 SUPERFAMILY Pseudouridine synthase 271 484 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gma05g00024 489 MobiDBLite consensus disorder prediction 94 109 - -
Gma05g00024 489 MobiDBLite consensus disorder prediction 60 109 - -
Gma05g00024 489 MobiDBLite consensus disorder prediction 174 194 - -
Gma05g00024 489 Pfam tRNA pseudouridylate synthase B C-terminal domain 442 485 IPR032819 -
Gma05g00024 489 Gene3D Pseudouridine synthase 266 488 - -
Gma05g00024 489 Hamap tRNA pseudouridine synthase B [truB]. 269 489 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gma05g00024 489 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 245 487 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gma05g00024 489 Pfam TruB family pseudouridylate synthase (N terminal domain) 291 441 IPR002501 GO:0006396
Gma05g00024 489 TIGRFAM TruB: tRNA pseudouridine(55) synthase 271 480 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gma05g00024 489 CDD PseudoU_synth_EcTruB 272 483 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gma05g00024 489 MobiDBLite consensus disorder prediction 62 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00024 Gma-Chr5 184463 190400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00024 272 463 NAC Transcription Factor Family AT3G57150 33.854 1.50e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00024 K03177 - gmx:100793939 837.41