Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02451 ATGTACGTACAATCAGGTGCCCAGCATAAAGTGATAGTTGAGTATGCACCTTCTCAGCGTGTTCCAAAGCCAAGTGCCAAAAAAGATGGACGTGAAGGGACTATATTCAAAGATCCAGATTATCTTGAGTTCCTCAAACTAATTGCAAAACCTCAAGAGCATCTTCCTAGTGCAGAGATACAATTGGAAAGAAAAGAATCTGAGCAAGTTGGGGCCAGCAAGGAAACACCTATTGTCACACCCCTGATGGAATATATTCGTCAGAAACGTGCTGTTGACAGTGGTATGCAGgcttcatcagcagtggcaaaagtttgcagaagatctagagctgctttgcctggtaagcctggctcaggcaatattaaacgtggatctgaaaagaaaaagTATGTTCAGAAGGACAATGCCAAGAGTGCTACTCGCAAAGAGTCAAAAAACATGTCAGCCTTTATTGTGGTCCCCCGGCGAGACGATCAATTTGCTGAATCAATGCATGGCGTTGAAGGTTCCATTTCTGGAATTCCACTGACTTCTGAGTCAGGAAAGAAAAAATTCCTTCTTCTTAAAGGGAAACAGCAGGACATTCCCAGTGCCACTGAGGCCACAGTAAAACAGCAAAACGTACAATCTGGAAATTCTCCTATTTCAACTCCTGCAAAACAGAACCAGAGACGTGAAGCTAGTGGAAGATTGATTAGGAGCATACTTCTAAATAATGAAGCTCGTCAAAGTCAGTCTACAACTGGTACACAACATAAAATTCAAATTTTAAGTTCTGAGAATGGGCAGCGACCCTCTCGTCGTTTTGGTTCAAGGTCTGGGTTAAATAATCAAGTCTCAAATCATGATGCTGCACAAATTAATTCCGAAGGGGATTCTAGAAGAGCATTGGACGAAAAGTTCATAAAAAGGGATCTTCATGGTTTGGGGAGCAGTGCCAAAACAGAAAAACGTACTAGAAACAAGGATAGACCTGATCGAGGTGTTTGGACACCCCTTCGTCGTTCTGATGTTTCGCATGCTGGTAACGACTATTCATCATCCTCATTGGCACAGCCTACTCAGTCAAATCCTGAATCTGCTGAAGGAGAAGTAAAAGAAAATGTTCCTTCTGGAAACAGGGGAGGTGAATTCTCTGCTTCTGCAGGTGGACACGGTGGCAATCCTTCAATTGAGAATGGTTCTCAAAGAAATTTTATTCATCATGGAGCTTCCTATGTAGTGAAGGATGATGGTGCAGTCAGTAGTATAAGCAAAGGGAAACCTTCCAAGAAAAGTGTTGGGCATAGTGCTCACGAGAGTAGAGAATCCCGTATTCCAATGCAGCCTCGCCAGAGTAGGAGAAACTATGTTGAAGGTTCTGATTTGGCGGAGAGTGAATCTAATTCTAAGCACTTTCTGAAGATCATACTTCCATCACCCATTCATGCCAACCAAATGAGGATTCCTGAAGAATTTATTAAAAGATTTGGAGATGAACTATCTAATGTTGCTACGGTTACTGTTCCCGATGGCCGTGTTTGGAAAATGAGATTGAAGAAATGTGGTAAAGATGTTTCGTTCCGCAGCAAATGGCGAGAGTTTGTAGAATACTATTCTCTCGGTTATGGTTCCTACCTAGTTTTCAGATATGAAGGGAATTCAAAATTTCGTGTTCTGATATTTGATACTACTTCTGCTGAGATTTGTTATCCAGACTTGGACAATAGGAAGAGGTCCAAGGTTGATGATCAAACAAGAAAGAAAGAGCATAAGGAAGCTATTGATGAAGATGATGTGAATTTGAAAGCATGGAAGAAAGAAAGTGATTGTTCGGAGATAGCAAAGGATGCTTCTACCAAGCCAAAACACCCTTCTGTTACTTGTACCATCCAGCCTTATCGGTTGTATGTGAGAAGTCACTTTTCTAAAAAGCATCTGAAGCCAAATGTTTGTATGATGCTCCAAAATTGTAATGGGGAGCAGTGGGATGTTTCTTGCGTATGCCATAATACGCGCTATGGAGGAATGATGCTAACAAGAGGATGGCGTAAATTTGTAAGGGACAACGATCTATCCGAAGGAGATCCTTGCGTATTGGAGTTGATCGAGACCAACCCAGCTGTTGTGCTTAAACTTACTGTGCTTGGTGCACCTGAATATCACAGTTCACGTCCGCACTGA 2166 0.4007 MYVQSGAQHKVIVEYAPSQRVPKPSAKKDGREGTIFKDPDYLEFLKLIAKPQEHLPSAEIQLERKESEQVGASKETPIVTPLMEYIRQKRAVDSGMQASSAVAKVCRRSRAALPGKPGSGNIKRGSEKKKYVQKDNAKSATRKESKNMSAFIVVPRRDDQFAESMHGVEGSISGIPLTSESGKKKFLLLKGKQQDIPSATEATVKQQNVQSGNSPISTPAKQNQRREASGRLIRSILLNNEARQSQSTTGTQHKIQILSSENGQRPSRRFGSRSGLNNQVSNHDAAQINSEGDSRRALDEKFIKRDLHGLGSSAKTEKRTRNKDRPDRGVWTPLRRSDVSHAGNDYSSSSLAQPTQSNPESAEGEVKENVPSGNRGGEFSASAGGHGGNPSIENGSQRNFIHHGASYVVKDDGAVSSISKGKPSKKSVGHSAHESRESRIPMQPRQSRRNYVEGSDLAESESNSKHFLKIILPSPIHANQMRIPEEFIKRFGDELSNVATVTVPDGRVWKMRLKKCGKDVSFRSKWREFVEYYSLGYGSYLVFRYEGNSKFRVLIFDTTSAEICYPDLDNRKRSKVDDQTRKKEHKEAIDEDDVNLKAWKKESDCSEIAKDASTKPKHPSVTCTIQPYRLYVRSHFSKKHLKPNVCMMLQNCNGEQWDVSCVCHNTRYGGMMLTRGWRKFVRDNDLSEGDPCVLELIETNPAVVLKLTVLGAPEYHSSRPH 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02451 721 CDD B3_DNA 628 700 IPR003340 GO:0003677
Gma04g02451 721 MobiDBLite consensus disorder prediction 122 142 - -
Gma04g02451 721 ProSiteProfiles B3 DNA-binding domain profile. 647 713 IPR003340 GO:0003677
Gma04g02451 721 SUPERFAMILY DNA-binding pseudobarrel domain 616 705 IPR015300 -
Gma04g02451 721 Gene3D - 600 715 IPR015300 -
Gma04g02451 721 MobiDBLite consensus disorder prediction 240 288 - -
Gma04g02451 721 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS UPF3 4 512 - -
Gma04g02451 721 MobiDBLite consensus disorder prediction 309 397 - -
Gma04g02451 721 MobiDBLite consensus disorder prediction 412 458 - -
Gma04g02451 721 ProSiteProfiles B3 DNA-binding domain profile. 466 559 IPR003340 GO:0003677
Gma04g02451 721 MobiDBLite consensus disorder prediction 240 295 - -
Gma04g02451 721 Gene3D - 458 560 IPR015300 -
Gma04g02451 721 SMART B3_2 467 559 IPR003340 GO:0003677
Gma04g02451 721 SMART B3_2 620 713 IPR003340 GO:0003677
Gma04g02451 721 MobiDBLite consensus disorder prediction 202 228 - -
Gma04g02451 721 MobiDBLite consensus disorder prediction 111 144 - -
Gma04g02451 721 MobiDBLite consensus disorder prediction 309 334 - -
Gma04g02451 721 MobiDBLite consensus disorder prediction 202 225 - -
Gma04g02451 721 Pfam B3 DNA binding domain 467 558 IPR003340 GO:0003677
Gma04g02451 721 Pfam B3 DNA binding domain 629 701 IPR003340 GO:0003677
Gma04g02451 721 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 4 512 IPR039722 GO:0000184
Gma04g02451 721 Coils Coil 582 602 - -
Gma04g02451 721 MobiDBLite consensus disorder prediction 341 363 - -
Gma04g02451 721 SUPERFAMILY DNA-binding pseudobarrel domain 460 558 IPR015300 -
Gma04g02451 721 CDD B3_DNA 465 557 IPR003340 GO:0003677
Gma04g02451 721 MobiDBLite consensus disorder prediction 427 443 - -
Gma04g02451 721 Pfam Smg-4/UPF3 family 5 91 IPR005120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02451 Gma-Chr4 54887507 54900779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02451 459 592 B3 DNA Binding Superfamily AT1G49475 40.441 2.89e-24 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma04g02451 B3 9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02451 K14328 - gmx:100801152 824.698