Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02427 ATGCCTCGCCAACCTCCGCCTTCACCTCCGTCTCAGCCTGGTGTTCTCGACCCTGCACTCTGGCTTGTCTGCGCCGGAACCACCGTGGagatccccaccctccattctagggtttactacttcccccagggacacttcgatcaagcctcttccgctccaagaaacctctcccctctccttctttcgaaacccgccgttctctgccgcgtcgaatcggttcaattcctcgccgatcctctcaccgacgaggttttcgcgaagctgattcttcacccTGTCGCTGATTGCTTCGCTTCGGGACCTTCCGCTGTTGCTCCTGCTGCTGCTTCTGCTTCGGCTCAAACCGGTGAGaataacgtcgtttctttctcgaaggttctcactgcttctgatgctaataacggtgGGGGGTTTTCTGTTCCGAGGTTCTGCGCGGACTCTATCTTCCCGCCGCTGAACTTCCAGGCGGACCCGCCGGTGCAGAACCTCCTCGTCACCGACGTGCACGGTTTCGTCTGGGAGTTCCGCCACATTTACCGCGGGACGCCGCGGCGGCACCTGCTGACCACCGGCTGGAGCACGTTCGTCAACAACAAGAAGCTCGTGGCCGGTGACGTCGTCGTGTTCATGAAGAACTCCGGGGGAGGGTTGTTCGTCGGAATTCGCCGCGCCACGCGCTTCTCTATGGGGAAGGGTGGTGATAGAGGCGGAATGAGGATCAGGGTGGATgaggaggaggaggaggaggaggaggaggaagaggaagaggaggTGAGGGAGGTTTTCTCGAGGGACGGGAGGGGGAAGCTGTCGGCGAAGGTGGTTGCCGAGGCGGCGGAGCTGGCGGCGCGGAACATGCCGTTCGAGGTTGTTTATTATCCGAAGGAAAGGTGGTCGGAGTTTGTGGTGAAGACTGAAGCGGTTAATGAAGCAATGAAGGTCGCGTGGAGTCCCGGAATTAGAGTGAAGATCGCTGCGGAGACAGATGATTCGTCCAGGGTGTCGTGGTGTCAGGGTACGGTCTCTTCTGTCGCTCTTCACGGTAATGGCCAATGGCGCGGTTCTCTTTGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGGTTTGCAGATAGCAAAATGGGTCAGCCCTTGGCAGGTGGAACTTGTTTCAACCACACCTGCACTTCATTCAGCATTCCCCCCAATAAAAAGGATTAAAGCTGCTCATGATTCTGGGGTGTTTACTAATGGAGAGAGAGACCCCTTTCCTATGACAGGATTCACTAATTCGACAATGGGACAACTGAATCAGGCATTGTTGAGTTATGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGCATTTTCTGCATCAAGATTTTGCAATTATCCAACTGACATGTCTCGTCTGTGTATGGGTAATTCCTTTGGGAAGAGCACATTTCCATGGCTGAAAACATTGGAAACAGAGGTAAATGTTGGCAGCTCTCAATCTGATGAATTGTCACCTGATAGTCGTGGTAGTCTCCAATCCTGTGGCACAGACCTTGTTGGCAACTCAAGAAAACTTGGGTCTGTTTCATTTCAACTATTTGGTGCAGTCATTCAGACAGAACAGCCTGTTGAAAATGGTTTGCAAGGTACCGGTTGCACTTGCACGGGAGATGAATGCCAATGTCAAAGAGCCCTCAACAGCTGA 1689 0.4458 MPRQPPPSPPSQPGVLDPALWLVCAGTTVEIPTLHSRVYYFPQGHFDQASSAPRNLSPLLLSKPAVLCRVESVQFLADPLTDEVFAKLILHPVADCFASGPSAVAPAAASASAQTGENNVVSFSKVLTASDANNGGGFSVPRFCADSIFPPLNFQADPPVQNLLVTDVHGFVWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDVVVFMKNSGGGLFVGIRRATRFSMGKGGDRGGMRIRVDEEEEEEEEEEEEEEVREVFSRDGRGKLSAKVVAEAAELAARNMPFEVVYYPKERWSEFVVKTEAVNEAMKVAWSPGIRVKIAAETDDSSRVSWCQGTVSSVALHGNGQWRGSLWRMLQVTWDEPEGLQIAKWVSPWQVELVSTTPALHSAFPPIKRIKAAHDSGVFTNGERDPFPMTGFTNSTMGQLNQALLSYGTFPAGMQGARHDAFSASRFCNYPTDMSRLCMGNSFGKSTFPWLKTLETEVNVGSSQSDELSPDSRGSLQSCGTDLVGNSRKLGSVSFQLFGAVIQTEQPVENGLQGTGCTCTGDECQCQRALNS 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02427 562 PANTHER AUXIN RESPONSE FACTOR 9 558 - -
Gma04g02427 562 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677
Gma04g02427 562 Gene3D - 315 389 - -
Gma04g02427 562 Gene3D - 120 225 IPR015300 -
Gma04g02427 562 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Gma04g02427 562 CDD B3_DNA 122 223 IPR003340 GO:0003677
Gma04g02427 562 SUPERFAMILY DNA-binding pseudobarrel domain 114 228 IPR015300 -
Gma04g02427 562 SMART B3_2 123 225 IPR003340 GO:0003677
Gma04g02427 562 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 558 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma04g02427 562 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma04g02427 562 Coils Coil 235 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02427 Gma-Chr4 54664795 54668923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02427 16 552 B3 DNA Binding Superfamily AT1G77850 47.610 6.95e-162 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma04g02427 B3 1.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02427 - - gmx:102662128 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02427 04 54664795 54668923 Gma04g02427 04 54664795 54668923 ECH