Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma04g02423 | ATGCTCTGCTTCCTGTGTACGTTGTTGTTGCCGGCGATGACCGGGGACCGATGTCACCCGTGGGAGGGCATGGTGGAGGTTGGTGATGCTGCCGCCGTGGAGAGGCGGTGCGAGGCTAATTTTCCGGCTGAAATTCCTCGCAACTCTGCCGCCGTGCGTGAAATTGATTACTTGTCCCAGGCTAGGAAAGCGCTTGCGGAGCGTTCGCCTTTCGATGTTGCTGAAGAGACGTCGACTTCTGCCGCTGCGGTTACTCTCCCCGGTGGCTTGGCTAGTTTGCTGAACCGGCAGGGTGATAACCGGAGGCGTCTCAAGAAGTCTCATTCTGGCGCGAATAAGAGGAAATCGTCGAATAGGGCAAACCAGAAGAAGCCAGAGGATTCTAACATTTGGACTGAGACGGAGGAGTACTTTAGGGACTTGACCTTGGCTGATATTGACACCTTGTTTGAGGCCTCTCGCACTTCTAGTTTAGTGTCTCAGGACTGTTTCACCATCCCGTGTTTGGGAAATGCTCCTAGGCACAATGCAGTTACTAGTAATAGTGGGAATGAAATGGAGCCTGTTCCAAAATTCAATGTAGTAGTTAGTAGTGAGGATGGAGAAAAGGGTGAGGATGAAAACAAGGATGGTGAAGCGGTGGAAAGTGAGGATGAATTGTTGGTAATTGAGGCAATTGACGATGTTGCTGTTGAACAAGCTCCTCCCCAGGACGACAAGAGTCAGGACATTTCTGATTCTTCTGTTAGTCTAGAGTGGTTTTTAGGTTGTAGGAATAGGGTTTCTTTGACTTCTGAGCGCCCTACCAAGAAAAGAAGGCTTTTGGGTGTTGAAGCTGGTTTGGAGAAAGTTGTAATGACTTGTCCTTTTGATGAGGGCCAGCTGTTTTGCCATTATTGTGGCAGGGGAGACACTGGCAGGGATTCCAATAGGTTAATTGTCTGTGCTTCTTGTAAAGTGGCAGTTCACCGAAAGTGCTATGGTGTGCATGATGATATAGATGAGGCTTGGCTGTGCTCCTGGTGCAAGCAAAAGGTTGATGTTGATGTGTCGGTGAATCCTTGTGTTCTTTGCCCAATGAAGGGTGGTGCATTAAAACCAGTTAATAGCAGCGCGGAAGGTGTGGGGTCAGTCCCATTTGTGCACTTGTTTTGCTCTCTGTGGATGCCTGAGGTTTATATAGATGATTTGAAGAAGATGGAACCTGTTATGAATGTGGGAGAAATCAAGGAAACCCGGAAGAAATTAGTGTGTAGTGTTTGCAAAGCAAAGTGTGGTGCATGTGTTCGGTGTAGTCATGGAAGCTGCAGAGCTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCTAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATCTACCAGAAAACAGAAGCATCTTTCCATTGGAAGGCTCTATCGCAGTTAGGAATGATATCTCAGAAGCCAAAGGCTTTCCAGTGACATTGCCATTGAGTGGTGAACAGAACTTGAAAGATTGCAGGAATCGAGAATTAGCCTCTGATAGTAGTCCTGACAAACTGAACCATAATGATGAACCACCAGATGGAGGATTATCTGGTTGCAGGATAAGTGCTCATGATGACATGTTGGGATGTGGTGCTGTGCCCCAACAAAATGTTGGAGTGGTAGGGAGAGCCAATGAGAATATTGATGCATCTGACTCTCTCAGTTTTGCGCTTGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTGATGTAAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACCAATGAAGCTTATATGGCCCCTGATGTCCAACACAAAATAGTCAATTGGCTAAAAGCCCATGTATATACTAATGCATTTCAGAAGGGTTTAAAAGTTAAATTCAAACCAGCCAATGCATCCAAAAATGATAGTGGAGCCACAGATGGTTCTGATACTTTACCAATGTCAGATTCGGGTTTGTTGGATCCTGTTGCTGTTAAGTCAGTTCCGCCCAGGAGAAGAACCACCAATAACATTAGAATTTTGAAGGATAATAATGTGTTATGTTCATCTGAAGGGGTTACTGGTGAGAATGGGATGCCGGTGGACATGTGCCGAGTAGGTCAGTCTGACTGTGACAATCCAACAAATTATAATGAAGCATCCATTCCCAATGCAACTGAAATGAACTTAACCAAGTCTGAGGATATTTTTCATGAAGTTCAAGGCAATGCTTCTGGATGTGTCTCAGAAGACAAGTCTACTGCTTGTTTGCAAAATGCTTCTGTGCTTTCTGATCACTGTGTTGTCCATTCTGCTTCAGAACCACCTGATTTTGGTTTCATAAAGAAGGATGCAATCTCTAGTTACATTCATCCATACATCAACAAGAAATTGCTGCAGATTCGTGATGGGGTGCCCTTGGAGGACATTATATGTTCAAGTGATGAGGGAAATTCTTCTTTGGTTGAATCCTTTGGGGGTAGTGCCTGCTCAAGTACCCAAAATCAGAACTTAACTCAAGTTGATTTTTCAAAGCCTGATGAAGTAAATATGGAGCAGTTGGTTAGGGCTATAAAAATGGGACTTTTTGAATTTTCTCCACAAGATGAATTGGAGGGGGAACTTGTTTATTTTCAGCATAGATTATTGCAGAATGCAGTTGCAAAAAAGAGGCATATTGATAACTTAATCTATAGTGTTGCCAAGAGTTTGCCACATGAGATTGATAAGGCACATCAACAAAGATGGGATGAAGTTATTGTTAATCAATATCTGCGTGATCTTAGAGAGGCAAAAAAGCAAGGCAGAAAAGAAAGAAAGCACAAAGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCTGCTGCAGCAGCATCTACTAGGGCTCTCCGGAAAGACAACTTAGATGAATCAATGCAACAAGAGAATTTGTTAAAATTGGATACTCTAAATGGAAGAACCGGTGCTTGTTCTCAGCCAATGCCTCGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGACAAGAACTTCGTCCGAGAAATATTCAGAATTTTGCATGCCAACCTCAGATTTGTCTAAGGAGCAATGTAAATCATGTGATATTTGCAGACGATCAGAGTTTATTTTAAACCCTATCCTAGTGTGCTCTGGTTGCAAGGTTTCGGTGCACTTGGATTGTTATCGTAGTGTGAAAGAAACAACAGGTCCGTGGTACTGTGAGTTATGTGAAGATTTGTCCTCTAGAAGCTCTGGGGCAGCTGCTATCAATTTCTGGGAGAAGTCTGTTGTAGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGAAAGTCTTCTGATGGTCAATGGGTTCATGCCTTCTGTGCTGAGTGGGTTTTTGAGTCTACATTCAAAAGAGGACAAATAGATGCTGTTGAAGGAATGGAAACTTTGCAAAAAGGAGTTGACATTTGTTGCATCTGCCACCACAAGCATGGTGTATGCATGAAGTGTTGCTACGGTCATTGTCAGACCACATTCCATCCATCCTGTGCTAGAAGAGCTGGTTTGTACATGAATGTGAGGCCTACTGGTGGCAAGGCTCAACACAAAGCTTACTGTGAAAAACATAGTTTGGAGCAGAAGGCAAAGGCTGAAACTCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAGATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGAGGGAATTGGTAATATCTTCACATGACATACTGGCCTTTAAAAGAGATCATGTTGCTAGGTCGGTGCTGGCTCGTAGCCATTTCATCCTTCCGGATGGTAGTTCAGAATCAGCTACAACGTCCCTTAAAGGGAACACAGAGGGTTACAGATCATGCAGTGAACCACTCCAAAGATCGGATGATGTTACTGTGGACAGTTCAGTTTCTGCCAAGCGCCGTGTCAGAGTCGCCATATCTATGGACACAGACCCAAAATTGGACGATGACTGCTCAACCTCTCAAAGTCGATACAACCACAAGATTCTTGATAGATCACAATTTTCTGGCAAGAAAGTTCCTCAGAGAGCCGCTGCATCACGCAATATTTCCGATGAAGGTGGATGGAGATCCAAATCTAGAAAGCATTCGGAGACATTCGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCAATGCTACCTAAAGGATATGCATATGTTCCTGCTGATTGCTTGTCAAATGAGAAGCACTCTAACGAGGACGTATATGCTAGTGAACCAGTGGAGCATGATAGGTAG | 4353 | 0.4367 | MLCFLCTLLLPAMTGDRCHPWEGMVEVGDAAAVERRCEANFPAEIPRNSAAVREIDYLSQARKALAERSPFDVAEETSTSAAAVTLPGGLASLLNRQGDNRRRLKKSHSGANKRKSSNRANQKKPEDSNIWTETEEYFRDLTLADIDTLFEASRTSSLVSQDCFTIPCLGNAPRHNAVTSNSGNEMEPVPKFNVVVSSEDGEKGEDENKDGEAVESEDELLVIEAIDDVAVEQAPPQDDKSQDISDSSVSLEWFLGCRNRVSLTSERPTKKRRLLGVEAGLEKVVMTCPFDEGQLFCHYCGRGDTGRDSNRLIVCASCKVAVHRKCYGVHDDIDEAWLCSWCKQKVDVDVSVNPCVLCPMKGGALKPVNSSAEGVGSVPFVHLFCSLWMPEVYIDDLKKMEPVMNVGEIKETRKKLVCSVCKAKCGACVRCSHGSCRASFHPLCAREARHRMEVWAKYGNDNVELRAFCLKHSDLPENRSIFPLEGSIAVRNDISEAKGFPVTLPLSGEQNLKDCRNRELASDSSPDKLNHNDEPPDGGLSGCRISAHDDMLGCGAVPQQNVGVVGRANENIDASDSLSFALVLKKLIDRGKVDVKDVALEIGISPDTLTANTNEAYMAPDVQHKIVNWLKAHVYTNAFQKGLKVKFKPANASKNDSGATDGSDTLPMSDSGLLDPVAVKSVPPRRRTTNNIRILKDNNVLCSSEGVTGENGMPVDMCRVGQSDCDNPTNYNEASIPNATEMNLTKSEDIFHEVQGNASGCVSEDKSTACLQNASVLSDHCVVHSASEPPDFGFIKKDAISSYIHPYINKKLLQIRDGVPLEDIICSSDEGNSSLVESFGGSACSSTQNQNLTQVDFSKPDEVNMEQLVRAIKMGLFEFSPQDELEGELVYFQHRLLQNAVAKKRHIDNLIYSVAKSLPHEIDKAHQQRWDEVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASTRALRKDNLDESMQQENLLKLDTLNGRTGACSQPMPRAKETLSRVAVTRTSSEKYSEFCMPTSDLSKEQCKSCDICRRSEFILNPILVCSGCKVSVHLDCYRSVKETTGPWYCELCEDLSSRSSGAAAINFWEKSVVECALCGGTTGAFRKSSDGQWVHAFCAEWVFESTFKRGQIDAVEGMETLQKGVDICCICHHKHGVCMKCCYGHCQTTFHPSCARRAGLYMNVRPTGGKAQHKAYCEKHSLEQKAKAETQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVISSHDILAFKRDHVARSVLARSHFILPDGSSESATTSLKGNTEGYRSCSEPLQRSDDVTVDSSVSAKRRVRVAISMDTDPKLDDDCSTSQSRYNHKILDRSQFSGKKVPQRAAASRNISDEGGWRSKSRKHSETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNEKHSNEDVYASEPVEHDR | 1450 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma04g02423 | 1450 | MobiDBLite | consensus disorder prediction | 1295 | 1326 | - | - | |
| Gma04g02423 | 1450 | ProSiteProfiles | Zinc finger PHD-type profile. | 294 | 345 | IPR019787 | - | |
| Gma04g02423 | 1450 | MobiDBLite | consensus disorder prediction | 518 | 534 | - | - | |
| Gma04g02423 | 1450 | ProSiteProfiles | Zinc finger PHD-type profile. | 1042 | 1091 | IPR019787 | - | |
| Gma04g02423 | 1450 | SUPERFAMILY | FYVE/PHD zinc finger | 285 | 345 | IPR011011 | - | |
| Gma04g02423 | 1450 | Coils | Coil | 939 | 959 | - | - | |
| Gma04g02423 | 1450 | ProSitePatterns | Zinc finger PHD-type signature. | 297 | 342 | IPR019786 | - | |
| Gma04g02423 | 1450 | PANTHER | PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED | 107 | 481 | - | - | |
| Gma04g02423 | 1450 | PANTHER | PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED | 832 | 1440 | - | - | |
| Gma04g02423 | 1450 | MobiDBLite | consensus disorder prediction | 1295 | 1325 | - | - | |
| Gma04g02423 | 1450 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 352 | 473 | IPR034732 | - | |
| Gma04g02423 | 1450 | PANTHER | PHD FINGER PROTEINS | 832 | 1440 | - | - | |
| Gma04g02423 | 1450 | PANTHER | PHD FINGER PROTEINS | 107 | 481 | - | - | |
| Gma04g02423 | 1450 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 1108 | 1217 | IPR034732 | - | |
| Gma04g02423 | 1450 | MobiDBLite | consensus disorder prediction | 650 | 676 | - | - | |
| Gma04g02423 | 1450 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 347 | IPR013083 | - | |
| Gma04g02423 | 1450 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 350 | 475 | IPR013083 | - | |
| Gma04g02423 | 1450 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1105 | 1218 | IPR013083 | - | |
| Gma04g02423 | 1450 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1020 | 1098 | IPR013083 | - | |
| Gma04g02423 | 1450 | MobiDBLite | consensus disorder prediction | 198 | 217 | - | - | |
| Gma04g02423 | 1450 | SMART | PHD_3 | 1163 | 1217 | IPR001965 | - | |
| Gma04g02423 | 1450 | SMART | PHD_3 | 1044 | 1089 | IPR001965 | - | |
| Gma04g02423 | 1450 | SMART | PHD_3 | 296 | 343 | IPR001965 | - | |
| Gma04g02423 | 1450 | SMART | PHD_3 | 417 | 473 | IPR001965 | - | |
| Gma04g02423 | 1450 | MobiDBLite | consensus disorder prediction | 653 | 667 | - | - | |
| Gma04g02423 | 1450 | MobiDBLite | consensus disorder prediction | 92 | 131 | - | - | |
| Gma04g02423 | 1450 | MobiDBLite | consensus disorder prediction | 518 | 542 | - | - | |
| Gma04g02423 | 1450 | Pfam | PHD-zinc-finger like domain | 354 | 472 | - | - | |
| Gma04g02423 | 1450 | Pfam | PHD-zinc-finger like domain | 1109 | 1216 | - | - | |
| Gma04g02423 | 1450 | CDD | ePHD | 1111 | 1216 | - | - | |
| Gma04g02423 | 1450 | MobiDBLite | consensus disorder prediction | 1387 | 1401 | - | - | |
| Gma04g02423 | 1450 | MobiDBLite | consensus disorder prediction | 1364 | 1401 | - | - | |
| Gma04g02423 | 1450 | Pfam | PHD-finger | 1056 | 1089 | - | - | |
| Gma04g02423 | 1450 | Pfam | PHD-finger | 310 | 343 | - | - | |
| Gma04g02423 | 1450 | SUPERFAMILY | FYVE/PHD zinc finger | 1039 | 1089 | IPR011011 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma04g02423 | Gma-Chr4 | 54623398 | 54635174 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma04g02423 | 291 | 479 | C2H2 Transcription Factor Family | AT3G14740 | 29.167 | 1.80e-16 | 80.9 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Gma04g02423 | zf-HC5HC2H_2 | 4.9e-24 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma04g02423 | - | - | gmx:100775631 | 2867.8 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma04g02423 | 04 | 54623398 | 54635174 | Gma04g02423 | 04 | 54623398 | 54635174 | ECH |