Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02419 ATGGCACAAACGCTGGCAATGCCCGTGGCACCTTCGCTAGCTATCATCTCCAATTCTCGCCTCTCCAACACACTCTCCGTTCCCGTTCTGAACAAACCAAAGGTTCAAGGGTCAAGCATCAAGTGCGTTCGTGTTGGCGGTGTGGAGATTCCGAACAACAAGCGAATCGAGTACTCGCTGCAGTACATTCATGGAGTTGGAAGGACCAGAGCGAAACAGATTCTCTGTGATATCCAAATGGATAATAAAATCACGAAGGAACTCACTGAGGAGGAGCTAATCACACTCAGGGACGAGGTCTCCAAATACATGATTGAAGGCGACCTGAGACGGTTCAATGCGGTTAATATAAAGAGACTGAAGGATATTCAGTGCTACAGAGGAATAAGGCATATTCAGGGGCTTCCTTGCAGAGGCCAGCGAACCAAGAATAATTGCAGAACCTTGAAGGGTAAGAAGGTTGCCATTGCCGGTAAAAAGAAAAAGTAA 489 0.4703 MAQTLAMPVAPSLAIISNSRLSNTLSVPVLNKPKVQGSSIKCVRVGGVEIPNNKRIEYSLQYIHGVGRTRAKQILCDIQMDNKITKELTEEELITLRDEVSKYMIEGDLRRFNAVNIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02419 162 Hamap 30S ribosomal protein S13 [rpsM]. 42 158 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gma04g02419 162 Gene3D - 43 111 - -
Gma04g02419 162 ProSiteProfiles Ribosomal protein S13 family profile. 45 151 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gma04g02419 162 Pfam Ribosomal protein S13/S18 44 148 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gma04g02419 162 SUPERFAMILY S13-like H2TH domain 43 154 IPR010979 GO:0003676
Gma04g02419 162 Coils Coil 86 106 - -
Gma04g02419 162 TIGRFAM uS13_bact: ribosomal protein uS13 44 153 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gma04g02419 162 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 161 - -
Gma04g02419 162 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 1 161 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gma04g02419 162 ProSitePatterns Ribosomal protein S13 signature. 127 140 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gma04g02419 162 Gene3D 30s ribosomal protein s13, domain 2 112 162 IPR027437 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02419 Gma-Chr4 54574715 54575748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02419 43 160 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 31.250 2.87e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02419 K02952 - gmx:100500355 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02419 04 54574715 54575748 Gma04g02419 04 54574715 54575748 ECH
Gma04g02419 04 54574715 54575748 Gma06g00977 06 9094546 9095828 GST