Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02415 ATGGAGGATTTGCAAAGTGGTCTGCAGAATCGCAAATTATCACTCTCAACCCTCCCAGAAAAGGGTCGTTCTCTCTTGGCCACTAGGGATTTCTATCCAGGGGAAGTGATTATAAGCCAAGAGCCTTACGTTTGTGTTCCAAACAACTCCTCGGTCTCCCCCCAGAAAAGGTGCGATGGATGTTTCACTACAATTAATAACAACGTCCTTAGCAGGTGCTCGCGTTGCCAACTTGCATTCTATTGTGGAACCGCATGTCAGAGGTCAGAGTGGAAGCTGCATCGTCTTGAGTGTGAGGTCCTCTCCAGCCTCCACAAATACAAGAGAAAATCTCTCACACCATCCATACGCCTGATGCTCAGACTTTATCTTCGGAGGAAGTTGCAAAATGATAAGATCATCCCAAGCACTGCAATGGACAACTACAACTTGGTGGAGGCATTAGTGGCTCACATGTCTGACATCACAGAGGAGCAGCTGGTGCTTTATGCACAGATGGCTAATCTTGTAAACTCCATACTAGAATGGCCAGGAATCAATATAAAAGAGATTGCTGAAAATTTTTCTAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTGAGACCTGTGGGAACAGGATTGTATCCTGTTATTTCCATCATCAATCACAGCTGTTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGCTCAGCTTTGGTACGTGCGGTGCAGCATATACCCTCAGGTACTGAGGTGCTGATAAGTTACATAGAGACTGCTGAAAGCACTATGACTCGACAGAAGGCTCTCAAAGAGCAGTACCTATTCACTTGTACATGTCCTCGCTGTTCTAAAGTGGGTCAGTATGATGATATCCAAGAAAGTGCAATTCTAGAAGGATACAAATGCAAAAGTGAAAAATGTGGTGGTTTCTTGCTTCGTACAACTGATGGGAAAGGATTCCAATGCCAAGGTTGTGGACTAATTAGGGACAAGGAGGAGATAAAGAGAATTACAACTGAAATTAAATTGCTATCTGAAGATGCTTCTAAGCCCTCTGCCACTTGCAATTATCAAGAAGCTATTTCCATATATAAAAGGATTGAGAAGCTGCAAACAGAACTCTTTCATCCTTTATCAATCAACTTGATGCATACTAGGGAGAAGATTTTGAAGTCACTAATGGAGCTGGAACACTGGACAGAAGCTTTAGCATATTGCAAATTGACCATACCATTCTATCAAAGAGTGTATCCAGCTGTTCACCCTCTGCCTGGCTTGCAATATTATACTTGTGGAAAACTAGAATGGTATCTTGGAGACACAGAGGAAGCTGTTAAATCACTGACCAAGGCCGTGGATATACTACGGATTACTCATGGCACAAATACACCTTTCATGAAGGACCTCTTGATGAAGTTGGAAGAAGCCCGTACTGAAGCTTCTTACAAATTTTCCTCTAAAGAGTAG 1458 0.428 MEDLQSGLQNRKLSLSTLPEKGRSLLATRDFYPGEVIISQEPYVCVPNNSSVSPQKRCDGCFTTINNNVLSRCSRCQLAFYCGTACQRSEWKLHRLECEVLSSLHKYKRKSLTPSIRLMLRLYLRRKLQNDKIIPSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVNSILEWPGINIKEIAENFSKFACNAHTICDSELRPVGTGLYPVISIINHSCLPNSVLVFEGSSALVRAVQHIPSGTEVLISYIETAESTMTRQKALKEQYLFTCTCPRCSKVGQYDDIQESAILEGYKCKSEKCGGFLLRTTDGKGFQCQGCGLIRDKEEIKRITTEIKLLSEDASKPSATCNYQEAISIYKRIEKLQTELFHPLSINLMHTREKILKSLMELEHWTEALAYCKLTIPFYQRVYPAVHPLPGLQYYTCGKLEWYLGDTEEAVKSLTKAVDILRITHGTNTPFMKDLLMKLEEARTEASYKFSSKE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02415 485 Pfam SET domain 22 252 IPR001214 GO:0005515
Gma04g02415 485 ProSitePatterns Zinc finger MYND-type signature. 58 98 IPR002893 -
Gma04g02415 485 Gene3D SET domain 24 279 IPR046341 -
Gma04g02415 485 Pfam MYND finger 58 98 IPR002893 -
Gma04g02415 485 ProSiteProfiles Zinc finger MYND-type profile. 58 98 IPR002893 -
Gma04g02415 485 ProSiteProfiles SET domain profile. 11 253 IPR001214 GO:0005515
Gma04g02415 485 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 477 - -
Gma04g02415 485 SUPERFAMILY TPR-like 352 451 IPR011990 GO:0005515
Gma04g02415 485 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 477 - -
Gma04g02415 485 SMART set_7 11 259 IPR001214 GO:0005515
Gma04g02415 485 Gene3D - 111 195 - -
Gma04g02415 485 Gene3D - 57 110 - -
Gma04g02415 485 SUPERFAMILY SET domain 12 252 IPR046341 -
Gma04g02415 485 Gene3D Tetratricopeptide repeat domain 406 483 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02415 Gma-Chr4 54507919 54513800 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma04g02415 SET 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02415 K11426 - gmx:100789518 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02415 04 54507919 54513800 Gma04g02415 04 54507919 54513800 ECH
Gma04g02415 04 54507919 54513800 Gma06g00981 06 9160169 9165188 GST