Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02409 ATGGCCGAGAGTCGGAGATCCACGGGCACGGTTAAGTGGTTCAACTCGCAGAAGGGTTTCGGATTCATAACTCCCCAAGATGGAACCGATGATCTCTTCGTGCACTTCACTTCCATCCGATCCGACGGCTACCGTTCTTTATCCGAGGGTCAGTCCGTTGAGTTTCTCCTCGATTACGGCGACGACGGCCGCACCATGGCCGTCGACGTCACCTCCGCCGTTAGATCTCGCCGTCCAGGGGGCTTCCGCGGCGGAGGAGGGAGGGGAAGAGGAGGAGGCCGCGGCGGAGGGTTCGGTCGGAGAGGAGGAGGTCCTgagtgttataattgtggaagaatagGAATCGGAGACGCGGCGGCGGTGGCGGTGGAGGAGGACGAGGGtgttttaactgtggggaggaagggcattttgtga 417 0.5396 MAESRRSTGTVKWFNSQKGFGFITPQDGTDDLFVHFTSIRSDGYRSLSEGQSVEFLLDYGDDGRTMAVDVTSAVRSRRPGGFRGGGGRGRGGGRGGGFGRRGGGPECYNCGRIGIGDAAAVAVEEDEGVLTVGRKGIL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02409 138 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Gma04g02409 138 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Gma04g02409 138 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 136 - -
Gma04g02409 138 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Gma04g02409 138 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Gma04g02409 138 Gene3D - 1 71 IPR012340 -
Gma04g02409 138 MobiDBLite consensus disorder prediction 75 101 - -
Gma04g02409 138 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Gma04g02409 138 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Gma04g02409 138 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Gma04g02409 138 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Gma04g02409 138 SMART csp_8 8 73 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02409 Gma-Chr4 54460150 54460630 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gma04g02409 CSD 1.1e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02409 - - gmx:100815731 175.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02409 04 54460150 54460630 Gma06g00987 06 9215865 9216890 GST