Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02406 ATGGAAATAGACATGGACATGGACTTCTCCGGTTACAGCACAATCACCAACACAATCCCCTCTTCTGATGATGACTATGGTTGCAACTGGAACCATTGGTCCCCCGTCGTCAACTGGGACGCCTTCACCGGCGCCCACGACGACTTCCACCACCTCATCGACTCCATCATGTGCGACAGCGCCGCCGCGGAGGAGGACAACCTCAGCCCCGACGATCACGCCGCCAGCAACTCCCCCTCCGCCTCCGTCACGGAGGAGGAGGACGACGACGCCGACGAAGAAACCGGCCCCGTCGACGATTCCAAGGGCCTGAGAGTCGTCCATCTCCTGATGGCCGCCGCGGAGGCCCTCACTGGTGCTCCCAAGAGCCGCGACCTGGCTCGAGTGATATTGGTTCGGCTCAAGGAGTTGGTCTCCCACGCAGCGCCACCGCACGGCTCCAACATGGAGAGGCTCGCCGCCTACTTCACCGACGCCCTCCAGGGCCTGCTAGAGGGCGCCAGCGGGGGTGCGCACAACAACAAACGTCACCACCACTACAACATCATCACGTCGTCATGTGGGCCCCACCACCGCGACGATCATCATAATCACCAAAGCAACACCCTCGCGGCGTTCCAACTGCTCCAGGACATGTCACCCTACGTCAAGTTCGGGCACTTCACGGCCAACCAGGCCATCCTGGAGTCCGTGGCCCACGAGCGCCGTGTCCACATCGTCGATTACGACATCATGGAAGGGGTCCAGTGGGCCTCCCTCATGCAGGCCCTCGCCTCCAACAAAACGGGCCCACCGGGCCCACACCTTCGTATAACCGCATTGTCCCGCACGGGCTCCGGACGCCGCTCCATCGCCACCGTCCAAGAAACAGGGCGGCGCTTGACGGCGTTCGCAGCCTCCCTTGGTCAACCGTTCTCCTTCCACCATTGCAGGTTGGACCCCGACGAAACTTTTAAACCTTCGTCGCTTAAGCTGGTTCGCGGAGAGGCTTTGGTTTTTAACTGCATGCTGAACTTACCGCACCTTAGTTACCGCGCGCCGGATTCGGTAGCGTCGTTTTTGAGCGGAGCCAAAGCGTTGAAGCCGAGGCTGGTGACTTTGGTGGAGGAGGAGGTGGGGTCCAGTGCTGGAGGGTTCGTGGGGCGGTTTATGGAGTCGCTGCATCACTATTCAGCGGTCTTTGACTCGCTGGAGGCTGGGTTTCCGATGCAGGGGCGGGCCAGGGCGCTTGTGGAGCGGGTTTTCTTCGGCCCAAGGATAGTGGGGTCGCTGGGCCGCTTATACCGGACGGGGGAGGAGGAGAGAGGGTCGTGGGGGGAATGGTTGGGTGCGGCGGGCTTCAGGGGAGTTCCGATGAGCTTCGCCAATCATTGCCAAGCCAAGCTGTTAATTGGTCTTTTCAACGACGGCTATAGGGTAGAGGAGTTGGGGACCAACAAGTTGGTCTTGGATTGGAAATCTAGGCGCTTGCTTTCTGCCTCCCTTTGGACTCAGATTAATTCATTTTAA 1509 0.6004 MEIDMDMDFSGYSTITNTIPSSDDDYGCNWNHWSPVVNWDAFTGAHDDFHHLIDSIMCDSAAAEEDNLSPDDHAASNSPSASVTEEEDDDADEETGPVDDSKGLRVVHLLMAAAEALTGAPKSRDLARVILVRLKELVSHAAPPHGSNMERLAAYFTDALQGLLEGASGGAHNNKRHHHYNIITSSCGPHHRDDHHNHQSNTLAAFQLLQDMSPYVKFGHFTANQAILESVAHERRVHIVDYDIMEGVQWASLMQALASNKTGPPGPHLRITALSRTGSGRRSIATVQETGRRLTAFAASLGQPFSFHHCRLDPDETFKPSSLKLVRGEALVFNCMLNLPHLSYRAPDSVASFLSGAKALKPRLVTLVEEEVGSSAGGFVGRFMESLHHYSAVFDSLEAGFPMQGRARALVERVFFGPRIVGSLGRLYRTGEEERGSWGEWLGAAGFRGVPMSFANHCQAKLLIGLFNDGYRVEELGTNKLVLDWKSRRLLSASLWTQINSF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02406 502 ProSiteProfiles GRAS family profile. 97 497 IPR005202 -
Gma04g02406 502 MobiDBLite consensus disorder prediction 64 100 - -
Gma04g02406 502 Pfam GRAS domain family 107 497 IPR005202 -
Gma04g02406 502 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 497 IPR005202 -
Gma04g02406 502 PANTHER SCARECROW-LIKE PROTEIN 26 14 497 IPR030028 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02406 Gma-Chr4 54439962 54441470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02406 138 497 GRAS Transcription Factor Family AT3G54220 37.808 6.00e-58 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma04g02406 GRAS 4.8e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02406 - - gmx:100787926 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02406 04 54439962 54441470 Gma04g02406 04 54439962 54441470 ECH
Gma04g02406 04 54439962 54441470 Gma06g00991 06 9243982 9245631 GST