Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02402 ATGTCATTGAGTCCTCCCAGAGAGAGAAACAACAATGGGAATGCCCAAGCGAGGACGTTCCAGCTCTACTATTGCTTCCAGTGCAACCGCACGGTCCGCGCCGCACCCGATAACAACAACCCCACCCAAATCACGTGCCCGCGCTGCTTCGGCCAATTCATCTGCGAAATCAACATGCCGCGTCCAAGGCTCGTCGTGGACTTCACCACACCGGACCCCTCCCCAGAAGCGCGTTTGCTCGAAGCACTTTCCCTCATGATGGACCCACCCATCCGCCGCTTCCCCGGTTTAATCCAACCCCAACCCGAAGAGCTCCCCGTCTACCACCGCCACCGCCGCCCTCGTCGCCGCCACCCCGAACCCGAACCCGAACCCCAACACCGCCCCCGCACCTGGATCGTTTTCCAGCCCATGGACCCATCCAACCCCTTCGAGCCCATTAACATCCCAAACCGACGcggcccaggcccaatccacggcccgggcccaatccCGCGCGGACTGGACGCGCGAGATTATTTCTTCGGGCCAGGGCTTAACGAACTCATCGAACAGATAACAGAAAACGACCGGCAGGGTCCGGCGCCGGCGCCGGAACGGGCTATCGAGGCTATTCCGACGGTGAAAATCGAGAGCGCGCATCTGAAGGAGAATTCTCAGTGTCCTGTTTGTCAGGAGGAGTTCGAAGTGGGTGGAGAAGCGAGGGAGCTTCAGTGCAAGCACATATATCACTCCGATTGCATTGTTCCGTGGCTGAGGCTGCACAATTCTTGCCCCGTGTGCCGGCACGAGGTTCCGGTGCCGTCGTCGTCGTCGTCGTCGGAGGGTGATGAATGCGTTGGTGACGGCGGAGAAGGTAGGTTGCAGAGGTGCTTGAGGTGGACTCGTCGTTTTACTTCGCTTTGGCCATTCAATGCAAGGTATCGTCGACGGGTTCACCCTCAAGGAAATAATACTACTGTTGCTGCTTCTTCTTCAAGGGGATATTCTCCATCTAACAGTCCCACATTATTCTCTAGAGCTAATCGGAGGCAGCCCTCTTGTTGCATTCTTTAA 1056 0.5521 MSLSPPRERNNNGNAQARTFQLYYCFQCNRTVRAAPDNNNPTQITCPRCFGQFICEINMPRPRLVVDFTTPDPSPEARLLEALSLMMDPPIRRFPGLIQPQPEELPVYHRHRRPRRRHPEPEPEPQHRPRTWIVFQPMDPSNPFEPINIPNRRGPGPIHGPGPIPRGLDARDYFFGPGLNELIEQITENDRQGPAPAPERAIEAIPTVKIESAHLKENSQCPVCQEEFEVGGEARELQCKHIYHSDCIVPWLRLHNSCPVCRHEVPVPSSSSSSEGDECVGDGGEGRLQRCLRWTRRFTSLWPFNARYRRRVHPQGNNTTVAASSSRGYSPSNSPTLFSRANRRQPSCCIL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02402 351 Pfam zinc-ribbon 21 57 IPR039525 GO:0061630
Gma04g02402 351 SUPERFAMILY RING/U-box 201 268 - -
Gma04g02402 351 SMART ring_2 221 261 IPR001841 -
Gma04g02402 351 MobiDBLite consensus disorder prediction 95 129 - -
Gma04g02402 351 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
Gma04g02402 351 Pfam Ring finger domain 220 262 IPR001841 -
Gma04g02402 351 MobiDBLite consensus disorder prediction 313 343 - -
Gma04g02402 351 PANTHER - 13 282 - -
Gma04g02402 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 13 282 - -
Gma04g02402 351 MobiDBLite consensus disorder prediction 313 347 - -
Gma04g02402 351 CDD RING-H2_RNF126_like 220 262 - -
Gma04g02402 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 268 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02402 Gma-Chr4 54401324 54404259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02402 193 304 C3H Transcription Factor Family AT1G68180 46.491 3.26e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02402 K11982 - gmx:100787399 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02402 04 54401324 54404259 Gma04g02402 04 54401324 54404259 ECH
Gma04g02402 04 54401324 54404259 Gma06g00996 06 9283234 9287614 GST