Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02389 ATGGACGCCACCGTCACCGACCTCAGTCCCTCCTGCAATGCCGCCGCCGAACCGCCGCGCCGCAGTGTCCGCCGGCGACTGGTCCAGTCGACGCTCTTCCCTCACAAGCCACCGGAGCCTGATCAAAAGAACGACAAAGAGGACGAACGCGACGAGGATTACTCCGACTCTGAGAATCACAAGAAGAGGAAGAAACCCAAGGCTAAAACAACTCCTCGAAAAAAAGCTTCCAAGAATGCCACGCCAAAGAAAAATGTGTCGGCTAATGGGACTAACAAGGGGTCCACTTCGCGGCAGGTGTTAGCTGATTCCGATCGGGTTATTGCACCGGTGCATGATTTGTTTTTAGAAGCGAAATTGGCTGCTGAGGAAGATTCGAGGATATTCACAGGACGGCAGATACATCCATTTTTTTCACTGTGGAAGGCGGGGAAGAAAGTTCAGGACGTGGCTGATTCAGGAAGTAATTTATCAACAACAAAGAGTGAGGATGAAAGGACTACCTGTGGTCCTATTCATGTATTTGAAAATACTCAGGATGACACCTCATCCCTTGACTGGAGAAACTGGACGTTTTTGGAGAATACTACCTCTATGAACTATGGTTCAGAAAGTTTAAATTCATCTGTTTTGGAGGCTTCTGTTGAATCCTTGAATTTTGATAAGCTTCGTAGTTCCTTGTATCCCTCAGGCACTTCAATTTCTCAGAATTCCTTATCTTCAGATAGACTTTGTATACATCCAGAAAATCTGGAAGAACTATCACCATCAAACTCAGCTTCACTAGCAAAGCAAACATGTCCTCCGACATGTGAAGATGCCAAACTGGACTTGGAGGTGGATGAATCTGCTACTACAACAGTGCAAGCTGGCATTTTTAGAAAGTCGGATACTGAACCACCAATTAGATTTCTTCAAGAAAGTATGAGATCTTATTACTGTAGTTGTGTAGATAAGGCAGAGAACAGCTTATGGACATACAAATACAAGCCAACAAAGGCTGTTGAGGTGTGTGGTAATGATGAATCAGTGAACTTCTTGCGTGACTGGCTACATCTATGGCATGAAAGACGTTATAAAAGCAGGAAGGATATCTCTGACATGGATAAAAGTGACATGCGAGATGTTGGTGATGACGATGATGATTATAAATGCTCCTATAGTGATTACGATTCAGAAGATATAAATGAGGAGGATTCCCTGCAGAATGTTCTTTTAATTACGGGACCAATTGGGAGTGGAAAGTCTGCAGCAGTCTATGCTTGTGCCGAAGAGCAAGGGTTTGAGATTTTAGAGCTTAATGCATCAGATTGTAGAAATGGAACTGCTGTCAGGAATTATTTTGGAGATGCTCTTGGTTCACTTGGGTTCAAAAGGTCATCAGAAAACACTGCAAGTCCACAGAAGAAAACTACGAAGTTCCCCTTGGCTTTGGCTTTGTTCAGTGGTAAAGCTGCTGATGAGGTGAATGATGGGGTGGATGAACTGATAACCATACCTGATGATGAAGCTCATATCCCCAGTGGATCATTACAGAAGTTACTTGGCAAAAACAATGTAGTTGCATCATGTGATAAAGTGCAAACTTTAATTCTAATTGAGGATGTGGACATCCTTTCTCCTGAAGATCGTGGATGTATTGCTGCCATCCAACAGATTGCTGAGACTGCAAAGGGGCCAATTATATTGACCAGTAATAGTGATAATCCTGGCCTGCCAGATAATTTTGATGTGCTTCATGTTTCATTCGTGTTGCCATCACCAAAGGAGTTGCTTTGCCATTTGTATACTGTTTGTCTCACTGAGGGAGTCAACATCCATCCTCTTTTACTGGAGAAGTTTATACATTCTTGTGATGGAGATATCCGAAAATCCATTATGCATCTTCAGTTCTGGTTTCAGGGTAAAAGATTTCAAAAAGATGGAAAGGCACAAACACATTATGGCTCGCTTCCATTTGATCTTGAGCTTGGCCATCAGATACTACCGAAGATTATGCCCTGGGATTTCCCCTCAGAGATATCCAAACTAATTGAGAATGAAATCACCAAATCAACAAATAAAATGGAAGAAACTTCTAGAGGGTTGGTTACAGAGCTTCTTCACACAGATGAACAGAAAAATGATTTAAATGTGCAGTGTATGGAAGCTGATTATATAGAGGCCAAGAAGGTGGAGATGATTAAGAGAAATAGTTCTTTGACAGATTACAGCGAGCTTGAAATTCAATATAATGCTATTTCTGAGTTTGCCAATTCTTCTGATTCCCCGCTTACATCCTGTCGGCAAAATGGTCGAAGGAAACTTGTAGTCATGTCCTCTGATTCTGAGGATGAGGATTCAAATAATGGATATCCTGTAGACACACATGATGAAGCTAATACAAGACAATTGATGAAAGAAAATAATGAATGTCCCTCTGAGCTTCAATTAAATGGAAACTACCCCAGCACAACACTTCGCAAGCTGGTTTGTTCTGAATTTGAGCATTCAGAGGAGGAACATTTTAAATATTCAGAAACAGCTGATGATACATGCTTAAATGAAACATGTAAATCATTAGATGCATCCTGTGTGCCAGAATCAACGTTTGTTCCTGAGACTGAAATTGAAAATGGAACGGAGTCAATTTCTGGAGCAGTGTCTTCTGGCCCTCTTGTTGGTCCTCAGGATCAGGAAGTTTCTGTGAATAATGAGTTGAAACCATTCTGTGTTCGAAGGCGCTTAACAAAATTGTCGCAAAATCCAGATTTGTTGGATACTGAAATTTCAGACCATTCTCCTAAAGGGGTTCTGCAAGATGTTCTAGATGAACATATAGAAACAATTGTTAATGTGATGGATGAGTGCAGTCGTGTGGATTTCAAAGCAAAGCCAATGTTTTTGCAGTCCAATCCATTAACAGAGACAGAAAAAATACAAAAATTGTGGAAAGATCTTCGTGAGCGTCGCATGGATTTAAAACAGCATGCTACCTCGGAACAGCTGGGTGCTTTTCAAGTTGTTAAACTTGCTAGTGGGCTGAACAATCTAATTTCAGAAGCTGACTTATTTCATAAACGTGATATTATGGAACCTTCAACGTTCCTTTCTGGTGAAGCCACATCTAGCTGGTATCATGAACAAATAATGACGTCCACTGTTGCTGAACATGGGTTTTGCTTTTACGCTAAGCTTATAGCAGATGAAGCATCAAAGTTGGGTTGTGCAAATTGTGTTGATATTACTTCTGAGATGTTGGCTTCCGCCATTAAATTATCCGGACAGGATCTCACAAAAAGCAAAGTTATCTATACTGGAAAGGAAGTAGAGTGGAAAAGCCCAATAAATAGTACGCAGAAGAGTGAAAACAAAACATCTCAGTTCAAAGCCATCCAATCCATTGTTCCTGCAAGAATATCCTTGGCATTGAAAGGTGGTGCATTCAATGAATATCTATCTTCATTACGCGAAATTACGAGGTCAGAAGCTTCCCGCATTTCACAAGAAGTTGAAAAGAATAGAAGAGGAAGGGTACGTGGTTTTCATCATTACTTGAGCAGATGTACCACGTTGTCTCCTGAAGATATATCTTTGGTGAGTGAGGGTAATCTGTACAGAAAGGATTCTTCACAACATACAACATAG 3627 0.4116 MDATVTDLSPSCNAAAEPPRRSVRRRLVQSTLFPHKPPEPDQKNDKEDERDEDYSDSENHKKRKKPKAKTTPRKKASKNATPKKNVSANGTNKGSTSRQVLADSDRVIAPVHDLFLEAKLAAEEDSRIFTGRQIHPFFSLWKAGKKVQDVADSGSNLSTTKSEDERTTCGPIHVFENTQDDTSSLDWRNWTFLENTTSMNYGSESLNSSVLEASVESLNFDKLRSSLYPSGTSISQNSLSSDRLCIHPENLEELSPSNSASLAKQTCPPTCEDAKLDLEVDESATTTVQAGIFRKSDTEPPIRFLQESMRSYYCSCVDKAENSLWTYKYKPTKAVEVCGNDESVNFLRDWLHLWHERRYKSRKDISDMDKSDMRDVGDDDDDYKCSYSDYDSEDINEEDSLQNVLLITGPIGSGKSAAVYACAEEQGFEILELNASDCRNGTAVRNYFGDALGSLGFKRSSENTASPQKKTTKFPLALALFSGKAADEVNDGVDELITIPDDEAHIPSGSLQKLLGKNNVVASCDKVQTLILIEDVDILSPEDRGCIAAIQQIAETAKGPIILTSNSDNPGLPDNFDVLHVSFVLPSPKELLCHLYTVCLTEGVNIHPLLLEKFIHSCDGDIRKSIMHLQFWFQGKRFQKDGKAQTHYGSLPFDLELGHQILPKIMPWDFPSEISKLIENEITKSTNKMEETSRGLVTELLHTDEQKNDLNVQCMEADYIEAKKVEMIKRNSSLTDYSELEIQYNAISEFANSSDSPLTSCRQNGRRKLVVMSSDSEDEDSNNGYPVDTHDEANTRQLMKENNECPSELQLNGNYPSTTLRKLVCSEFEHSEEEHFKYSETADDTCLNETCKSLDASCVPESTFVPETEIENGTESISGAVSSGPLVGPQDQEVSVNNELKPFCVRRRLTKLSQNPDLLDTEISDHSPKGVLQDVLDEHIETIVNVMDECSRVDFKAKPMFLQSNPLTETEKIQKLWKDLRERRMDLKQHATSEQLGAFQVVKLASGLNNLISEADLFHKRDIMEPSTFLSGEATSSWYHEQIMTSTVAEHGFCFYAKLIADEASKLGCANCVDITSEMLASAIKLSGQDLTKSKVIYTGKEVEWKSPINSTQKSENKTSQFKAIQSIVPARISLALKGGAFNEYLSSLREITRSEASRISQEVEKNRRGRVRGFHHYLSRCTTLSPEDISLVSEGNLYRKDSSQHTT 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02389 1208 MobiDBLite consensus disorder prediction 81 101 - -
Gma04g02389 1208 MobiDBLite consensus disorder prediction 1 101 - -
Gma04g02389 1208 CDD AAA 405 459 - -
Gma04g02389 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 638 IPR027417 -
Gma04g02389 1208 Gene3D - 586 648 - -
Gma04g02389 1208 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 78 1207 IPR004582 GO:0006281
Gma04g02389 1208 MobiDBLite consensus disorder prediction 38 61 - -
Gma04g02389 1208 Gene3D - 322 576 IPR027417 -
Gma04g02389 1208 MobiDBLite consensus disorder prediction 62 80 - -
Gma04g02389 1208 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 78 1207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02389 Gma-Chr4 54241521 54251289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02389 321 631 Core DNA Replication Machinery Family AT5G22010 22.956 1.18e-10 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02389 - - gmx:100784209 2342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02389 04 54241521 54251289 Gma04g02389 04 54241521 54251289 ECH
Gma04g02389 04 54241521 54251289 Gma06g01009 06 9425442 9435541 GST